[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13398	7959282	NM_194271	RNF34		ring finger protein 34

Fetching correlation data, please wait...
Getting list of correlations for id 13398.
Getting list of p-values for id 13398.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7959282	8091048	NR_023350	COPB2	0.886999	2.406392e-36	4.169555e-32	4.169555e-32
2	7959282	7980463	NM_012245	SNW1	0.880775	3.233201e-35	5.602167e-31	2.801084e-31
3	7959282	7944285	NM_001655	ARCN1	0.865400	1.112779e-32	1.928112e-28	6.427038e-29
4	7959282	8006690	NM_012138	AATF	0.859169	9.699538e-32	1.680639e-27	4.201597e-28
5	7959282	7973902	NM_003136	SRP54	0.857520	1.690864e-31	2.929760e-27	5.859521e-28
6	7959282	8168280	NM_001145408	NONO	0.853899	5.593313e-31	9.691533e-27	1.615256e-27
7	7959282	8135576	NM_015641	TES	0.853384	6.613010e-31	1.145836e-26	1.636909e-27
8	7959282	8094704	NM_005339	UBE2K	0.852434	8.991004e-31	1.557871e-26	1.947339e-27
9	7959282	8003758	NM_000430	PAFAH1B1	0.851433	1.240123e-30	2.148760e-26	2.387512e-27
10	7959282	8078738	NM_005109	OXSR1	0.846168	6.475755e-30	1.122054e-25	1.122054e-26
11	7959282	8061772	NM_012325	MAPRE1	0.844782	9.903701e-30	1.716014e-25	1.560013e-26
12	7959282	7928752	NM_014394	GHITM	0.844683	1.020705e-29	1.768575e-25	1.473813e-26
13	7959282	8146216	NM_001135694	VDAC3	0.844201	1.181986e-29	2.048027e-25	1.575405e-26
14	7959282	8110589	NM_015455	CNOT6	0.844010	1.252289e-29	2.169841e-25	1.549887e-26
15	7959282	7942553	NM_014752	SPCS2	0.843918	1.288035e-29	2.231778e-25	1.487852e-26
16	7959282	8101324	NM_031370	HNRNPD	0.843179	1.610216e-29	2.790020e-25	1.743763e-26
17	7959282	8080923	NM_002802	PSMC1	0.841793	2.441311e-29	4.230060e-25	2.488271e-26
18	7959282	8150797	NM_015941	ATP6V1H	0.841727	2.489587e-29	4.313708e-25	2.396504e-26
19	7959282	8058428	NM_005006	NDUFS1	0.841663	2.537510e-29	4.396744e-25	2.314076e-26
20	7959282	7930956	NM_007190	SEC23IP	0.840910	3.174989e-29	5.501303e-25	2.750651e-26
21	7959282	8021228	NM_005359	SMAD4	0.840824	3.257404e-29	5.644103e-25	2.687668e-26
22	7959282	7987172	NM_020154	C15orf24	0.839891	4.293152e-29	7.438745e-25	3.381248e-26
23	7959282	8148333	NM_015137	EFR3A	0.839721	4.512728e-29	7.819204e-25	3.399654e-26
24	7959282	8140828	NM_003130	SRI	0.839432	4.914489e-29	8.515334e-25	3.548056e-26
25	7959282	8132070	NM_002047	GARS	0.838906	5.733219e-29	9.933948e-25	3.973579e-26
26	7959282	7984641	NM_005744	ARIH1	0.838842	5.841686e-29	1.012189e-24	3.893034e-26
27	7959282	8080926	NM_006407	ARL6IP5	0.837740	8.057109e-29	1.396055e-24	5.170575e-26
28	7959282	7900119	NM_005119	THRAP3	0.837078	9.761639e-29	1.691399e-24	6.040711e-26
29	7959282	8152148	NM_015902	UBR5	0.836993	1.000411e-28	1.733411e-24	5.977281e-26
30	7959282	8006392	NM_002815	PSMD11	0.836968	1.007612e-28	1.745890e-24	5.819632e-26
31	7959282	7903294	NM_033055	HIAT1	0.836715	1.084016e-28	1.878275e-24	6.058951e-26
32	7959282	7989735	NM_006660	CLPX	0.836042	1.315745e-28	2.279791e-24	7.124347e-26
33	7959282	8099340	NM_017491	WDR1	0.835869	1.382725e-28	2.395847e-24	7.260142e-26
34	7959282	7922250	NM_181093	SCYL3	0.835642	1.475477e-28	2.556559e-24	7.519292e-26
35	7959282	8160914	NM_007126	VCP	0.835388	1.586841e-28	2.749519e-24	7.855770e-26
36	7959282	7976189	NM_002802	PSMC1	0.835254	1.648996e-28	2.857215e-24	7.936709e-26
37	7959282	8001185	NM_005880	DNAJA2	0.834387	2.110744e-28	3.657286e-24	9.884557e-26
38	7959282	7978718	NM_006364	SEC23A	0.834166	2.247754e-28	3.894683e-24	1.024917e-25
39	7959282	7970413	NR_003272	PSPC1	0.834045	2.325738e-28	4.029807e-24	1.033284e-25
40	7959282	8050908	NM_000182	HADHA	0.833340	2.839435e-28	4.919889e-24	1.229972e-25
41	7959282	8025429	NM_005968	HNRNPM	0.833085	3.050262e-28	5.285188e-24	1.289070e-25
42	7959282	7977657	NM_031314	HNRNPC	0.832949	3.169292e-28	5.491432e-24	1.307484e-25
43	7959282	8160622	NM_018225	SMU1	0.832909	3.205833e-28	5.554747e-24	1.291802e-25
44	7959282	8127637	NM_018247	TMEM30A	0.832194	3.918247e-28	6.789146e-24	1.542988e-25
45	7959282	7980523	NM_015859	GTF2A1	0.831595	4.631828e-28	8.025568e-24	1.783460e-25
46	7959282	8163784	NM_012164	FBXW2	0.831316	5.006509e-28	8.674778e-24	1.885821e-25
47	7959282	8095163	NM_001024924	EXOC1	0.829637	7.967550e-28	1.380537e-23	2.937314e-25
48	7959282	8006573	NM_139215	TAF15	0.829031	9.411872e-28	1.630795e-23	3.397490e-25
49	7959282	8027592	NM_001114093	LSM14A	0.828050	1.230747e-27	2.132516e-23	4.352074e-25
50	7959282	7932616	NM_005470	ABI1	0.827196	1.552086e-27	2.689300e-23	5.378599e-25

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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