[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12246	7987172	NM_020154	C15orf24		chromosome 15 open reading frame 24

Fetching correlation data, please wait...
Getting list of correlations for id 12246.
Getting list of p-values for id 12246.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.155 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7987172	7906703	NM_004550	NDUFS2	0.857820	1.529058e-31	2.649398e-27	2.649398e-27
2	7987172	8061186	NM_006363	SEC23B	0.857393	1.764731e-31	3.057749e-27	1.528875e-27
3	7987172	8163784	NM_012164	FBXW2	0.849067	2.626330e-30	4.550642e-26	1.516881e-26
4	7987172	7978208	NM_012461	TINF2	0.841881	2.377962e-29	4.120296e-25	1.030074e-25
5	7987172	7959282	NM_194271	RNF34	0.839891	4.293152e-29	7.438745e-25	1.487749e-25
6	7987172	8150797	NM_015941	ATP6V1H	0.839428	4.919796e-29	8.524531e-25	1.420755e-25
7	7987172	8160914	NM_007126	VCP	0.834832	1.860014e-28	3.222846e-24	4.604066e-25
8	7987172	8099340	NM_017491	WDR1	0.833509	2.706883e-28	4.690216e-24	5.862770e-25
9	7987172	7980463	NM_012245	SNW1	0.833191	2.961091e-28	5.130682e-24	5.700758e-25
10	7987172	8050908	NM_000182	HADHA	0.830193	6.834462e-28	1.184207e-23	1.184207e-24
11	7987172	8043105	NM_020122	KCMF1	0.829532	8.200975e-28	1.420983e-23	1.291803e-24
12	7987172	8078738	NM_005109	OXSR1	0.828517	1.083426e-27	1.877252e-23	1.564377e-24
13	7987172	8015490	NM_003315	DNAJC7	0.827021	1.627494e-27	2.819959e-23	2.169199e-24
14	7987172	8040639	NM_000183	HADHB	0.825422	2.503786e-27	4.338309e-23	3.098792e-24
15	7987172	8006392	NM_002815	PSMD11	0.825048	2.767177e-27	4.794688e-23	3.196459e-24
16	7987172	7978201	NM_006156	NEDD8	0.824417	3.274096e-27	5.673026e-23	3.545641e-24
17	7987172	7940051	NM_015457	ZDHHC5	0.823177	4.549137e-27	7.882289e-23	4.636641e-24
18	7987172	8168500	NM_000291	PGK1	0.822134	5.987000e-27	1.037367e-22	5.763152e-24
19	7987172	8018315	NM_006937	SUMO2	0.820111	1.014786e-26	1.758319e-22	9.254310e-24
20	7987172	8094704	NM_005339	UBE2K	0.818036	1.731710e-26	3.000535e-22	1.500267e-23
21	7987172	7911619	NM_002074	GNB1	0.816658	2.460194e-26	4.262778e-22	2.029894e-23
22	7987172	7944285	NM_001655	ARCN1	0.815505	3.292690e-26	5.705245e-22	2.593293e-23
23	7987172	7989735	NM_006660	CLPX	0.815400	3.380706e-26	5.857749e-22	2.546847e-23
24	7987172	7978718	NM_006364	SEC23A	0.814069	4.720598e-26	8.179380e-22	3.408075e-23
25	7987172	8001185	NM_005880	DNAJA2	0.811847	8.194165e-26	1.419803e-21	5.679212e-23
26	7987172	8091048	NR_023350	COPB2	0.810977	1.014664e-25	1.758108e-21	6.761956e-23
27	7987172	7922250	NM_181093	SCYL3	0.809733	1.375272e-25	2.382935e-21	8.825684e-23
28	7987172	7947894	NM_198700	CELF1	0.808752	1.744938e-25	3.023453e-21	1.079805e-22
29	7987172	7963935	NM_032364	DNAJC14	0.808735	1.752195e-25	3.036028e-21	1.046906e-22
30	7987172	7990211	NM_000520	HEXA	0.808198	1.994501e-25	3.455872e-21	1.151957e-22
31	7987172	8020241	NM_020232	PSMG2	0.807635	2.284430e-25	3.958231e-21	1.276849e-22
32	7987172	8018364	NM_002086	GRB2	0.807405	2.414289e-25	4.183239e-21	1.307262e-22
33	7987172	8080923	NM_002802	PSMC1	0.807401	2.416605e-25	4.187252e-21	1.268864e-22
34	7987172	7919856	NM_181746	LASS2	0.807168	2.555145e-25	4.427300e-21	1.302147e-22
35	7987172	7915504	NM_022821	ELOVL1	0.806986	2.669528e-25	4.625491e-21	1.321569e-22
36	7987172	7903079	NM_001938	DR1	0.806810	2.784567e-25	4.824819e-21	1.340228e-22
37	7987172	8063369	NM_018683	RNF114	0.806609	2.921484e-25	5.062055e-21	1.368123e-22
38	7987172	7976189	NM_002802	PSMC1	0.804883	4.403816e-25	7.630492e-21	2.008024e-22
39	7987172	8156826	NM_004612	TGFBR1	0.803501	6.098942e-25	1.056764e-20	2.709651e-22
40	7987172	7954029	NM_004064	CDKN1B	0.803470	6.144055e-25	1.064580e-20	2.661451e-22
41	7987172	8130952	NM_002793	PSMB1	0.803420	6.216593e-25	1.077149e-20	2.627193e-22
42	7987172	7966427	NM_006768	BRAP	0.803253	6.465215e-25	1.120228e-20	2.667209e-22
43	7987172	8110589	NM_015455	CNOT6	0.802863	7.082762e-25	1.227230e-20	2.854023e-22
44	7987172	8076515	NM_014570	ARFGAP3	0.802044	8.575468e-25	1.485871e-20	3.376980e-22
45	7987172	8166805	NM_005765	ATP6AP2	0.801999	8.665082e-25	1.501399e-20	3.336442e-22
46	7987172	7977657	NM_031314	HNRNPC	0.801604	9.497255e-25	1.645589e-20	3.577368e-22
47	7987172	8146216	NM_001135694	VDAC3	0.801022	1.087107e-24	1.883631e-20	4.007725e-22
48	7987172	7908543	NM_133494	NEK7	0.800636	1.188350e-24	2.059054e-20	4.289697e-22
49	7987172	7903294	NM_033055	HIAT1	0.800311	1.280994e-24	2.219578e-20	4.529752e-22
50	7987172	7931728	NM_015155	LARP4B	0.798996	1.732544e-24	3.001979e-20	6.003957e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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