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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 16596.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
16596 8018364 NM_002086 GRB2 link to infopage growth factor receptor-bound protein 2

Fetching correlation data, please wait...
Getting list of correlations for id 16596.
Getting list of p-values for id 16596.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.090 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8018364 8039796 NM_014453 CHMP2A link to infopage 0.887655 1.813711e-36 3.142616e-32 3.142616e-32
2 8018364 8089911 NM_005335 HCLS1 link to infopage 0.883564 1.028152e-35 1.781479e-31 8.907393e-32
3 8018364 7900382 NM_006367 CAP1 link to infopage 0.880965 2.993823e-35 5.187396e-31 1.729132e-31
4 8018364 7937465 NM_006755 TALDO1 link to infopage 0.878232 8.969006e-35 1.554060e-30 3.885149e-31
5 8018364 8119000 NM_001315 MAPK14 link to infopage 0.874721 3.534143e-34 6.123610e-30 1.224722e-30
6 8018364 7980005 NM_001005743 NUMB link to infopage 0.870917 1.491877e-33 2.584975e-29 4.308292e-30
7 8018364 8061668 NM_002110 HCK link to infopage 0.870734 1.597250e-33 2.767554e-29 3.953649e-30
8 8018364 8036808 NM_018457 PRR13 link to infopage 0.865326 1.142418e-32 1.979467e-28 2.474334e-29
9 8018364 7980547 NM_005065 SEL1L link to infopage 0.864386 1.594691e-32 2.763121e-28 3.070134e-29
10 8018364 8168500 NM_000291 PGK1 link to infopage 0.863945 1.862836e-32 3.227736e-28 3.227736e-29
11 8018364 7983512 NM_021199 SQRDL link to infopage 0.861009 5.174496e-32 8.965850e-28 8.150772e-29
12 8018364 7956593 NM_006812 OS9 link to infopage 0.858205 1.343778e-31 2.328364e-27 1.940304e-28
13 8018364 7955810 NM_018457 PRR13 link to infopage 0.856533 2.350100e-31 4.072018e-27 3.132322e-28
14 8018364 8025076 NM_005428 VAV1 link to infopage 0.856405 2.452164e-31 4.248865e-27 3.034904e-28
15 8018364 8082431 NM_004637 RAB7A link to infopage 0.855122 3.747031e-31 6.492480e-27 4.328320e-28
16 8018364 7911619 NM_002074 GNB1 link to infopage 0.855107 3.766634e-31 6.526447e-27 4.079030e-28
17 8018364 7950578 NM_001128620 PAK1 link to infopage 0.852863 7.827741e-31 1.356313e-26 7.978310e-28
18 8018364 8018305 NM_016185 HN1 link to infopage 0.850051 1.925337e-30 3.336031e-26 1.853351e-27
19 8018364 7958600 NM_033121 ANKRD13A link to infopage 0.848210 3.436422e-30 5.954288e-26 3.133836e-27
20 8018364 8116372 NM_018434 RNF130 link to infopage 0.847249 4.635099e-30 8.031236e-26 4.015618e-27
21 8018364 8011077 NM_006224 PITPNA link to infopage 0.847135 4.802551e-30 8.321380e-26 3.962562e-27
22 8018364 7974533 NM_021255 PELI2 link to infopage 0.846778 5.364507e-30 9.295081e-26 4.225037e-27
23 8018364 8157945 NM_001099270 ZBTB34 link to infopage 0.846384 6.058195e-30 1.049703e-25 4.563928e-27
24 8018364 8102006 NM_005908 MANBA link to infopage 0.846365 6.094286e-30 1.055957e-25 4.399820e-27
25 8018364 7960518 NM_001065 TNFRSF1A link to infopage 0.844323 1.138812e-29 1.973219e-25 7.892875e-27
26 8018364 7946478 NM_015213 DENND5A link to infopage 0.843888 1.299679e-29 2.251954e-25 8.661362e-27
27 8018364 8103911 NM_002199 IRF2 link to infopage 0.842203 2.159276e-29 3.741378e-25 1.385696e-26
28 8018364 8064790 NM_014737 RASSF2 link to infopage 0.840909 3.176007e-29 5.503068e-25 1.965381e-26
29 8018364 7945803 NM_001014438 CARS link to infopage 0.838332 6.780356e-29 1.174832e-24 4.051146e-26
30 8018364 7979085 NM_002863 PYGL link to infopage 0.836365 1.198942e-28 2.077407e-24 6.924689e-26
31 8018364 7945132 NM_002017 FLI1 link to infopage 0.835930 1.358612e-28 2.354066e-24 7.593762e-26
32 8018364 7900922 NM_004047 ATP6V0B link to infopage 0.835452 1.558301e-28 2.700067e-24 8.437711e-26
33 8018364 8009183 NM_203351 MAP3K3 link to infopage 0.834859 1.845718e-28 3.198076e-24 9.691139e-26
34 8018364 8015607 NM_139276 STAT3 link to infopage 0.834465 2.064734e-28 3.577564e-24 1.052225e-25
35 8018364 8094574 NM_015173 TBC1D1 link to infopage 0.832825 3.281917e-28 5.686578e-24 1.624737e-25
36 8018364 8076515 NM_014570 ARFGAP3 link to infopage 0.832503 3.592650e-28 6.224985e-24 1.729163e-25
37 8018364 7977803 NM_001077351 RBM23 link to infopage 0.832387 3.711220e-28 6.430431e-24 1.737954e-25
38 8018364 8127145 NM_021814 ELOVL5 link to infopage 0.829309 8.720645e-28 1.511026e-23 3.976384e-25
39 8018364 7977003 NM_015156 RCOR1 link to infopage 0.829175 9.045859e-28 1.567376e-23 4.018913e-25
40 8018364 8063509 NM_016407 C20orf43 link to infopage 0.828049 1.230902e-27 2.132784e-23 5.331960e-25
41 8018364 7982531 NM_006305 ANP32A link to infopage 0.827584 1.397018e-27 2.420613e-23 5.903934e-25
42 8018364 8017711 NM_006572 GNA13 link to infopage 0.826368 1.941507e-27 3.364050e-23 8.009642e-25
43 8018364 7989696 NM_001127889 SPG21 link to infopage 0.824506 3.197959e-27 5.541104e-23 1.288629e-24
44 8018364 8047381 NM_003879 CFLAR link to infopage 0.824503 3.200462e-27 5.545440e-23 1.260327e-24
45 8018364 8030374 NM_004107 FCGRT link to infopage 0.823989 3.668654e-27 6.356677e-23 1.412595e-24
46 8018364 8110055 NM_030627 CPEB4 link to infopage 0.823939 3.718033e-27 6.442235e-23 1.400486e-24
47 8018364 8166511 NM_005391 PDK3 link to infopage 0.823442 4.241871e-27 7.349890e-23 1.563806e-24
48 8018364 8165911 NM_005647 TBL1X link to infopage 0.822968 4.807445e-27 8.329860e-23 1.735387e-24
49 8018364 7968132 NM_014089 NUPL1 link to infopage 0.822836 4.977657e-27 8.624787e-23 1.760161e-24
50 8018364 8080487 NM_006254 PRKCD link to infopage 0.822216 5.860501e-27 1.015449e-22 2.030898e-24

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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