[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 12294.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12294	7945803	NM_001014438	CARS		cysteinyl-tRNA synthetase

Fetching correlation data, please wait...
Getting list of correlations for id 12294.
Getting list of p-values for id 12294.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.114 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7945803	8018364	NM_002086	GRB2	0.838332	6.780356e-29	1.174832e-24	1.174832e-24
2	7945803	7911619	NM_002074	GNB1	0.829794	7.630073e-28	1.322063e-23	6.610314e-24
3	7945803	8007505	NM_004941	DHX8	0.820865	8.342268e-27	1.445465e-22	4.818216e-23
4	7945803	7964701	NM_002076	GNS	0.815981	2.920117e-26	5.059687e-22	1.264922e-22
5	7945803	8103911	NM_002199	IRF2	0.811463	9.006428e-26	1.560544e-21	3.121088e-22
6	7945803	8109843	NM_004946	DOCK2	0.808217	1.985445e-25	3.440180e-21	5.733633e-22
7	7945803	8065832	NM_015638	TRPC4AP	0.806265	3.171085e-25	5.494539e-21	7.849341e-22
8	7945803	8093086	NM_005017	PCYT1A	0.805043	4.240637e-25	7.347751e-21	9.184689e-22
9	7945803	7945132	NM_002017	FLI1	0.804291	5.064637e-25	8.775497e-21	9.750552e-22
10	7945803	7900382	NM_006367	CAP1	0.797162	2.630131e-24	4.557228e-20	4.557228e-21
11	7945803	7945902	NM_016320	NUP98	0.794171	5.148666e-24	8.921094e-20	8.110085e-21
12	7945803	8028524	NM_004924	ACTN4	0.793344	6.188211e-24	1.072231e-19	8.935260e-21
13	7945803	8007471	NM_031858	NBR1	0.792816	6.955442e-24	1.205169e-19	9.270534e-21
14	7945803	7956593	NM_006812	OS9	0.792586	7.317687e-24	1.267936e-19	9.056683e-21
15	7945803	8156321	NM_003177	SYK	0.792377	7.662754e-24	1.327725e-19	8.851502e-21
16	7945803	8011542	NM_015113	ZZEF1	0.790790	1.085872e-23	1.881490e-19	1.175931e-20
17	7945803	7977803	NM_001077351	RBM23	0.790633	1.123817e-23	1.947238e-19	1.145434e-20
18	7945803	7980005	NM_001005743	NUMB	0.790616	1.128023e-23	1.954525e-19	1.085847e-20
19	7945803	7970162	NM_015205	ATP11A	0.789846	1.334137e-23	2.311659e-19	1.216663e-20
20	7945803	8061668	NM_002110	HCK	0.789743	1.364250e-23	2.363836e-19	1.181918e-20
21	7945803	7985695	NM_006738	AKAP13	0.789208	1.532224e-23	2.654884e-19	1.264231e-20
22	7945803	7942544	NM_001098638	RNF169	0.789101	1.568220e-23	2.717255e-19	1.235116e-20
23	7945803	8089911	NM_005335	HCLS1	0.785587	3.333144e-23	5.775338e-19	2.511017e-20
24	7945803	8015607	NM_139276	STAT3	0.784702	4.021866e-23	6.968687e-19	2.903620e-20
25	7945803	8025076	NM_005428	VAV1	0.784550	4.152716e-23	7.195411e-19	2.878164e-20
26	7945803	8006690	NM_012138	AATF	0.784009	4.655741e-23	8.067003e-19	3.102694e-20
27	7945803	8116622	NM_003804	RIPK1	0.783801	4.864623e-23	8.428932e-19	3.121827e-20
28	7945803	7987892	NM_022473	ZFP106	0.783628	5.044632e-23	8.740834e-19	3.121727e-20
29	7945803	8102006	NM_005908	MANBA	0.779774	1.125564e-22	1.950265e-18	6.725052e-20
30	7945803	8024936	NM_002967	SAFB	0.779716	1.139185e-22	1.973866e-18	6.579552e-20
31	7945803	8051396	NM_021209	NLRC4	0.779507	1.189393e-22	2.060861e-18	6.647937e-20
32	7945803	8145954	NM_006283	TACC1	0.777750	1.704812e-22	2.953927e-18	9.231023e-20
33	7945803	8127145	NM_021814	ELOVL5	0.777349	1.849989e-22	3.205475e-18	9.713561e-20
34	7945803	8160914	NM_007126	VCP	0.776777	2.078015e-22	3.600577e-18	1.058993e-19
35	7945803	7958600	NM_033121	ANKRD13A	0.776433	2.228191e-22	3.860787e-18	1.103082e-19
36	7945803	7947894	NM_198700	CELF1	0.775591	2.641806e-22	4.577457e-18	1.271516e-19
37	7945803	8094574	NM_015173	TBC1D1	0.775269	2.818777e-22	4.884095e-18	1.320026e-19
38	7945803	8119000	NM_001315	MAPK14	0.774838	3.074200e-22	5.326667e-18	1.401754e-19
39	7945803	8074791	NM_002745	MAPK1	0.774136	3.539103e-22	6.132204e-18	1.572360e-19
40	7945803	8108330	NM_016604	KDM3B	0.773950	3.673464e-22	6.365010e-18	1.591253e-19
41	7945803	8064790	NM_014737	RASSF2	0.773676	3.879884e-22	6.722676e-18	1.639677e-19
42	7945803	7950578	NM_001128620	PAK1	0.773203	4.264108e-22	7.388420e-18	1.759148e-19
43	7945803	8082431	NM_004637	RAB7A	0.772758	4.659362e-22	8.073277e-18	1.877506e-19
44	7945803	7980547	NM_005065	SEL1L	0.772577	4.829210e-22	8.367573e-18	1.901721e-19
45	7945803	7923659	NM_032833	PPP1R15B	0.771890	5.534181e-22	9.589075e-18	2.130906e-19
46	7945803	8099340	NM_017491	WDR1	0.771604	5.856879e-22	1.014821e-17	2.206134e-19
47	7945803	8105506	NM_020928	ZSWIM6	0.771545	5.924956e-22	1.026617e-17	2.184292e-19
48	7945803	8124088	NM_022113	KIF13A	0.771484	5.997490e-22	1.039185e-17	2.164969e-19
49	7945803	8072279	NM_153050	MTMR3	0.771194	6.351052e-22	1.100447e-17	2.245810e-19
50	7945803	8044375	NM_138621	BCL2L11	0.771153	6.401935e-22	1.109263e-17	2.218526e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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