[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16892	8089911	NM_005335	HCLS1		hematopoietic cell-specific Lyn substrate 1

Fetching correlation data, please wait...
Getting list of correlations for id 16892.
Getting list of p-values for id 16892.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8089911	7900382	NM_006367	CAP1	0.913119	6.271001e-42	1.086576e-37	1.086576e-37
2	8089911	7956593	NM_006812	OS9	0.894939	6.951241e-38	1.204442e-33	6.022208e-34
3	8089911	8018364	NM_002086	GRB2	0.883564	1.028152e-35	1.781479e-31	5.938262e-32
4	8089911	8168500	NM_000291	PGK1	0.880147	4.168147e-35	7.222148e-31	1.805537e-31
5	8089911	8048234	NM_152862	ARPC2	0.879183	6.139980e-35	1.063874e-30	2.127749e-31
6	8089911	7961532	NM_001175	ARHGDIB	0.877359	1.266305e-34	2.194126e-30	3.656877e-31
7	8089911	8127145	NM_021814	ELOVL5	0.874833	3.384903e-34	5.865021e-30	8.378602e-31
8	8089911	8102006	NM_005908	MANBA	0.869761	2.289945e-33	3.967788e-29	4.959735e-30
9	8089911	7982531	NM_006305	ANP32A	0.869173	2.843660e-33	4.927210e-29	5.474678e-30
10	8089911	7980547	NM_005065	SEL1L	0.865410	1.109095e-32	1.921730e-28	1.921730e-29
11	8089911	7911619	NM_002074	GNB1	0.862827	2.756546e-32	4.776268e-28	4.342061e-29
12	8089911	8063509	NM_016407	C20orf43	0.862752	2.829746e-32	4.903100e-28	4.085917e-29
13	8089911	7997168	NM_014761	KIAA0174	0.860313	6.570407e-32	1.138454e-27	8.757341e-29
14	8089911	8082431	NM_004637	RAB7A	0.859943	7.455284e-32	1.291777e-27	9.226979e-29
15	8089911	8084607	NM_021627	SENP2	0.858238	1.328850e-31	2.302498e-27	1.534999e-28
16	8089911	8039796	NM_014453	CHMP2A	0.857682	1.601875e-31	2.775569e-27	1.734731e-28
17	8089911	7980005	NM_001005743	NUMB	0.857657	1.614976e-31	2.798268e-27	1.646040e-28
18	8089911	8024936	NM_002967	SAFB	0.857116	1.935793e-31	3.354149e-27	1.863416e-28
19	8089911	7971573	NM_001268	RCBTB2	0.855902	2.897278e-31	5.020114e-27	2.642165e-28
20	8089911	8018558	NM_004035	ACOX1	0.852617	8.474987e-31	1.468461e-26	7.342305e-28
21	8089911	7955810	NM_018457	PRR13	0.851251	1.314113e-30	2.276964e-26	1.084269e-27
22	8089911	8119000	NM_001315	MAPK14	0.850884	1.477482e-30	2.560034e-26	1.163652e-27
23	8089911	7900119	NM_005119	THRAP3	0.849765	2.107912e-30	3.652379e-26	1.587991e-27
24	8089911	8155883	NM_012383	OSTF1	0.848128	3.525235e-30	6.108174e-26	2.545073e-27
25	8089911	8116372	NM_018434	RNF130	0.848124	3.530181e-30	6.116745e-26	2.446698e-27
26	8089911	7985695	NM_006738	AKAP13	0.847582	4.179593e-30	7.241981e-26	2.785377e-27
27	8089911	8047381	NM_003879	CFLAR	0.846226	6.360379e-30	1.102063e-25	4.081715e-27
28	8089911	8080923	NM_002802	PSMC1	0.844627	1.038155e-29	1.798811e-25	6.424326e-27
29	8089911	7977657	NM_031314	HNRNPC	0.843615	1.411843e-29	2.446300e-25	8.435516e-27
30	8089911	7976189	NM_002802	PSMC1	0.843584	1.424996e-29	2.469091e-25	8.230304e-27
31	8089911	7990020	NM_006305	ANP32A	0.842373	2.052220e-29	3.555882e-25	1.147059e-26
32	8089911	7913169	NM_004930	CAPZB	0.842304	2.094837e-29	3.629724e-25	1.134289e-26
33	8089911	8014825	NM_032875	FBXL20	0.842172	2.179849e-29	3.777024e-25	1.144553e-26
34	8089911	8036808	NM_018457	PRR13	0.841655	2.543953e-29	4.407907e-25	1.296443e-26
35	8089911	8045090	NM_020120	UGGT1	0.841550	2.625039e-29	4.548406e-25	1.299545e-26
36	8089911	8168852	NM_019597	HNRNPH2	0.840992	3.098751e-29	5.369206e-25	1.491446e-26
37	8089911	8030991	NR_003148	LOC147804	0.840821	3.260098e-29	5.648772e-25	1.526695e-26
38	8089911	7897620	NM_002631	PGD	0.840078	4.062029e-29	7.038278e-25	1.852178e-26
39	8089911	7952022	NM_001098526	AMICA1	0.839740	4.487727e-29	7.775885e-25	1.993817e-26
40	8089911	8063337	NR_003605	NCRNA00275	0.839417	4.935801e-29	8.552263e-25	2.138066e-26
41	8089911	8007976	NM_006310	NPEPPS	0.838674	6.136003e-29	1.063185e-24	2.593135e-26
42	8089911	7946478	NM_015213	DENND5A	0.838660	6.160841e-29	1.067489e-24	2.541640e-26
43	8089911	7919751	NM_021960	MCL1	0.838452	6.546747e-29	1.134355e-24	2.638035e-26
44	8089911	7963289	NM_016293	BIN2	0.837459	8.739988e-29	1.514378e-24	3.441768e-26
45	8089911	7973214	NM_014828	TOX4	0.837346	9.032765e-29	1.565107e-24	3.478016e-26
46	8089911	8062213	NM_016436	PHF20	0.837235	9.327377e-29	1.616155e-24	3.513379e-26
47	8089911	8099340	NM_017491	WDR1	0.837020	9.925818e-29	1.719847e-24	3.659248e-26
48	8089911	8047059	NM_031314	HNRNPC	0.836793	1.059950e-28	1.836576e-24	3.826200e-26
49	8089911	8072279	NM_153050	MTMR3	0.836711	1.085283e-28	1.880469e-24	3.837692e-26
50	8089911	8063636	NM_001001433	STX16	0.836139	1.279481e-28	2.216956e-24	4.433912e-26

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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