[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 14541.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14541	7976189	NM_002802	PSMC1		proteasome (prosome, macropain) 26S subunit, ATPase, 1

Fetching correlation data, please wait...
Getting list of correlations for id 14541.
Getting list of p-values for id 14541.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.112 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7976189	8080923	NM_002802	PSMC1	0.997195	8.601188e-118	1.490328e-113	1.490328e-113
2	7976189	8091048	NR_023350	COPB2	0.922735	1.912685e-44	3.314109e-40	1.657054e-40
3	7976189	8023672	NM_004869	VPS4B	0.897392	2.195118e-38	3.803481e-34	1.267827e-34
4	7976189	7980463	NM_012245	SNW1	0.893821	1.164242e-37	2.017283e-33	5.043206e-34
5	7976189	7977657	NM_031314	HNRNPC	0.893041	1.663273e-37	2.881954e-33	5.763907e-34
6	7976189	8146216	NM_001135694	VDAC3	0.891988	2.679589e-37	4.642924e-33	7.738207e-34
7	7976189	7973902	NM_003136	SRP54	0.890435	5.366970e-37	9.299349e-33	1.328478e-33
8	7976189	7971550	NM_014166	MED4	0.884075	8.307498e-36	1.439440e-31	1.799300e-32
9	7976189	8058428	NM_005006	NDUFS1	0.883466	1.070950e-35	1.855635e-31	2.061817e-32
10	7976189	7957177	NM_014999	RAB21	0.882351	1.698291e-35	2.942629e-31	2.942629e-32
11	7976189	8147228	NM_001359	DECR1	0.880396	3.770370e-35	6.532920e-31	5.939018e-32
12	7976189	7947015	NM_006292	TSG101	0.880240	4.015993e-35	6.958511e-31	5.798759e-32
13	7976189	8094704	NM_005339	UBE2K	0.878517	8.009569e-35	1.387818e-30	1.067552e-31
14	7976189	8001185	NM_005880	DNAJA2	0.877403	1.244396e-34	2.156164e-30	1.540117e-31
15	7976189	7989735	NM_006660	CLPX	0.876832	1.556974e-34	2.697769e-30	1.798513e-31
16	7976189	8162294	NM_006415	SPTLC1	0.875290	2.837935e-34	4.917291e-30	3.073307e-31
17	7976189	7928752	NM_014394	GHITM	0.874784	3.449503e-34	5.976954e-30	3.515855e-31
18	7976189	8048234	NM_152862	ARPC2	0.873077	6.624553e-34	1.147836e-29	6.376868e-31
19	7976189	7932616	NM_005470	ABI1	0.872500	8.240025e-34	1.427749e-29	7.514469e-31
20	7976189	8001149	NM_018206	VPS35	0.872197	9.236713e-34	1.600445e-29	8.002226e-31
21	7976189	7942553	NM_014752	SPCS2	0.871220	1.332480e-33	2.308787e-29	1.099423e-30
22	7976189	7983111	NM_003825	SNAP23	0.870204	1.944333e-33	3.368947e-29	1.531339e-30
23	7976189	8146243	NM_032410	HOOK3	0.868949	3.086934e-33	5.348730e-29	2.325535e-30
24	7976189	8127637	NM_018247	TMEM30A	0.868368	3.818757e-33	6.616760e-29	2.756983e-30
25	7976189	7913814	NM_015484	SYF2	0.867693	4.880103e-33	8.455755e-29	3.382302e-30
26	7976189	8015490	NM_003315	DNAJC7	0.867272	5.684102e-33	9.848843e-29	3.788016e-30
27	7976189	7916372	NM_004872	TMEM59	0.866698	6.992670e-33	1.211620e-28	4.487482e-30
28	7976189	8047059	NM_031314	HNRNPC	0.866116	8.617022e-33	1.493071e-28	5.332398e-30
29	7976189	7968297	NM_015932	POMP	0.864833	1.361223e-32	2.358592e-28	8.133076e-30
30	7976189	7917472	NM_001514	GTF2B	0.864582	1.487932e-32	2.578140e-28	8.593801e-30
31	7976189	8089527	NM_022488	ATG3	0.862280	3.335011e-32	5.778573e-28	1.864056e-29
32	7976189	8090546	NM_001127192	CNBP	0.861815	3.918988e-32	6.790431e-28	2.122010e-29
33	7976189	8168500	NM_000291	PGK1	0.861339	4.618686e-32	8.002798e-28	2.425090e-29
34	7976189	7899361	NM_177424	STX12	0.860268	6.671693e-32	1.156004e-27	3.400012e-29
35	7976189	8055672	NM_015702	MMADHC	0.860185	6.864821e-32	1.189468e-27	3.398479e-29
36	7976189	8164067	NM_002799	PSMB7	0.859761	7.933982e-32	1.374721e-27	3.818670e-29
37	7976189	8130952	NM_002793	PSMB1	0.859197	9.609825e-32	1.665094e-27	4.500255e-29
38	7976189	7939137	NM_006360	EIF3M	0.859059	1.006977e-31	1.744789e-27	4.591550e-29
39	7976189	8146637	NM_152758	YTHDF3	0.858859	1.077373e-31	1.866765e-27	4.786576e-29
40	7976189	8078738	NM_005109	OXSR1	0.858829	1.088498e-31	1.886040e-27	4.715100e-29
41	7976189	8132943	NM_001762	CCT6A	0.858689	1.141142e-31	1.977257e-27	4.822579e-29
42	7976189	8108568	NM_006083	IK	0.858238	1.328547e-31	2.301974e-27	5.480889e-29
43	7976189	7967304	NM_198261	RSRC2	0.857775	1.552643e-31	2.690264e-27	6.256429e-29
44	7976189	8075130	NM_012399	PITPNB	0.857762	1.559103e-31	2.701459e-27	6.139679e-29
45	7976189	8048703	NM_032338	LLPH	0.856280	2.556376e-31	4.429432e-27	9.843183e-29
46	7976189	8135464	NM_000108	DLD	0.856131	2.685949e-31	4.653943e-27	1.011727e-28
47	7976189	7979473	NM_016029	DHRS7	0.855538	3.268035e-31	5.662524e-27	1.204792e-28
48	7976189	7985166	NM_004136	IREB2	0.854843	4.106568e-31	7.115451e-27	1.482386e-28
49	7976189	7903541	NM_007269	STXBP3	0.854489	4.612812e-31	7.992620e-27	1.631147e-28
50	7976189	7908543	NM_133494	NEK7	0.853981	5.444728e-31	9.434081e-27	1.886816e-28

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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