[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13285	7917472	NM_001514	GTF2B		general transcription factor IIB

Fetching correlation data, please wait...
Getting list of correlations for id 13285.
Getting list of p-values for id 13285.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.149 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7917472	7977657	NM_031314	HNRNPC	0.909678	4.240741e-41	7.347931e-37	7.347931e-37
2	7917472	8168852	NM_019597	HNRNPH2	0.906813	1.966295e-40	3.407000e-36	1.703500e-36
3	7917472	8048234	NM_152862	ARPC2	0.888222	1.418552e-36	2.457924e-32	8.193081e-33
4	7917472	7916372	NM_004872	TMEM59	0.883936	8.805237e-36	1.525683e-31	3.814208e-32
5	7917472	8067017	NM_003859	DPM1	0.877331	1.279948e-34	2.217766e-30	4.435532e-31
6	7917472	8089527	NM_022488	ATG3	0.875458	2.659532e-34	4.608172e-30	7.680286e-31
7	7917472	7984112	NM_016530	RAB8B	0.872814	7.317707e-34	1.267939e-29	1.811342e-30
8	7917472	8129317	NM_020755	SERINC1	0.869175	2.841415e-33	4.923319e-29	6.154149e-30
9	7917472	8080923	NM_002802	PSMC1	0.868825	3.231131e-33	5.598581e-29	6.220645e-30
10	7917472	7976189	NM_002802	PSMC1	0.864582	1.487932e-32	2.578140e-28	2.578140e-29
11	7917472	8131975	NM_006024	TAX1BP1	0.860017	7.268441e-32	1.259403e-27	1.144912e-28
12	7917472	8047059	NM_031314	HNRNPC	0.859164	9.716983e-32	1.683662e-27	1.403051e-28
13	7917472	8088718	NM_003968	UBA3	0.856133	2.683797e-31	4.650216e-27	3.577089e-28
14	7917472	7920839	NM_006912	RIT1	0.855528	3.277976e-31	5.679748e-27	4.056963e-28
15	7917472	7974603	NM_002788	PSMA3	0.854239	5.004711e-31	8.671662e-27	5.781108e-28
16	7917472	8122705	NM_005389	PCMT1	0.852701	8.249023e-31	1.429308e-26	8.933176e-28
17	7917472	8055672	NM_015702	MMADHC	0.851316	1.287162e-30	2.230266e-26	1.311921e-27
18	7917472	7951397	NM_033292	CASP1	0.851302	1.292908e-30	2.240222e-26	1.244568e-27
19	7917472	8146564	NM_002865	RAB2A	0.851262	1.309703e-30	2.269322e-26	1.194380e-27
20	7917472	8127637	NM_018247	TMEM30A	0.850070	1.913505e-30	3.315530e-26	1.657765e-27
21	7917472	8135464	NM_000108	DLD	0.849504	2.288932e-30	3.966033e-26	1.888587e-27
22	7917472	7964745	NM_016056	TMBIM4	0.849288	2.449848e-30	4.244852e-26	1.929478e-27
23	7917472	8036710	NM_004877	GMFG	0.848881	2.785081e-30	4.825711e-26	2.098135e-27
24	7917472	7978833	NM_001001	RPL36AL	0.848286	3.355955e-30	5.814863e-26	2.422860e-27
25	7917472	7978570	NM_021249	SNX6	0.848259	3.383701e-30	5.862939e-26	2.345176e-27
26	7917472	8048703	NM_032338	LLPH	0.847759	3.955737e-30	6.854105e-26	2.636194e-27
27	7917472	7974587	NM_018477	ACTR10	0.846835	5.270002e-30	9.131333e-26	3.381975e-27
28	7917472	7979698	NM_015994	ATP6V1D	0.846802	5.324208e-30	9.225255e-26	3.294734e-27
29	7917472	8146216	NM_001135694	VDAC3	0.846504	5.837295e-30	1.011428e-25	3.487683e-27
30	7917472	8107356	NM_152624	DCP2	0.843655	1.394805e-29	2.416779e-25	8.055929e-27
31	7917472	8130952	NM_002793	PSMB1	0.843251	1.575881e-29	2.730529e-25	8.808158e-27
32	7917472	8110022	NM_003945	ATP6V0E1	0.843090	1.654045e-29	2.865964e-25	8.956138e-27
33	7917472	8041236	NM_014946	SPAST	0.842121	2.213173e-29	3.834765e-25	1.162050e-26
34	7917472	7932616	NM_005470	ABI1	0.841619	2.571418e-29	4.455496e-25	1.310440e-26
35	7917472	7974725	NM_016475	JKAMP	0.841456	2.699080e-29	4.676695e-25	1.336199e-26
36	7917472	8130765	BC112329	FAM103A1	0.841196	2.917030e-29	5.054338e-25	1.403983e-26
37	7917472	8112967	NM_174909	TMEM167A	0.841057	3.039940e-29	5.267304e-25	1.423596e-26
38	7917472	7989023	NM_004580	RAB27A	0.840126	4.005181e-29	6.939777e-25	1.826257e-26
39	7917472	7957177	NM_014999	RAB21	0.840105	4.030370e-29	6.983422e-25	1.790621e-26
40	7917472	7983360	NM_004048	B2M	0.840075	4.065843e-29	7.044886e-25	1.761222e-26
41	7917472	8128716	NM_006016	CD164	0.839440	4.902002e-29	8.493698e-25	2.071634e-26
42	7917472	7947015	NM_006292	TSG101	0.839136	5.360056e-29	9.287369e-25	2.211278e-26
43	7917472	8019930	NM_033546	MYL12B	0.838741	6.017781e-29	1.042701e-24	2.424886e-26
44	7917472	8155849	NM_000700	ANXA1	0.837383	8.936661e-29	1.548455e-24	3.519217e-26
45	7917472	8018439	NM_005324	H3F3B	0.837053	9.830089e-29	1.703260e-24	3.785021e-26
46	7917472	8168500	NM_000291	PGK1	0.837048	9.846292e-29	1.706067e-24	3.708841e-26
47	7917472	7910550	NM_005999	TSNAX	0.835668	1.464524e-28	2.537580e-24	5.399106e-26
48	7917472	8091048	NR_023350	COPB2	0.834860	1.845129e-28	3.197055e-24	6.660531e-26
49	7917472	8081055	NM_014043	CHMP2B	0.834695	1.933601e-28	3.350350e-24	6.837450e-26
50	7917472	7919800	NM_004079	CTSS	0.833921	2.409104e-28	4.174255e-24	8.348509e-26

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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