[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 11013.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
11013	8122705	NM_005389	PCMT1		protein-L-isoaspartate (D-aspartate) O-methyltransferase

Fetching correlation data, please wait...
Getting list of correlations for id 11013.
Getting list of p-values for id 11013.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.176 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8122705	7977657	NM_031314	HNRNPC	0.869194	2.821653e-33	4.889077e-29	4.889077e-29
2	8122705	7978570	NM_021249	SNX6	0.865747	9.833781e-33	1.703899e-28	8.519496e-29
3	8122705	8041236	NM_014946	SPAST	0.863950	1.859559e-32	3.222058e-28	1.074019e-28
4	8122705	7916372	NM_004872	TMEM59	0.863388	2.265684e-32	3.925750e-28	9.814376e-29
5	8122705	8130952	NM_002793	PSMB1	0.856954	2.042956e-31	3.539831e-27	7.079661e-28
6	8122705	8048234	NM_152862	ARPC2	0.856918	2.067440e-31	3.582253e-27	5.970422e-28
7	8122705	7917472	NM_001514	GTF2B	0.852701	8.249023e-31	1.429308e-26	2.041869e-27
8	8122705	7918813	NM_002524	NRAS	0.847899	3.787077e-30	6.561868e-26	8.202335e-27
9	8122705	8048703	NM_032338	LLPH	0.847119	4.826223e-30	8.362396e-26	9.291551e-27
10	8122705	8046604	NM_003659	AGPS	0.847064	4.909649e-30	8.506949e-26	8.506949e-27
11	8122705	8154765	NM_001539	DNAJA1	0.846283	6.249175e-30	1.082795e-25	9.843587e-27
12	8122705	7974587	NM_018477	ACTR10	0.843035	1.681710e-29	2.913899e-25	2.428249e-26
13	8122705	7968297	NM_015932	POMP	0.842843	1.782007e-29	3.087684e-25	2.375141e-26
14	8122705	7978833	NM_001001	RPL36AL	0.842423	2.021683e-29	3.502969e-25	2.502121e-26
15	8122705	8091048	NR_023350	COPB2	0.840828	3.254145e-29	5.638457e-25	3.758971e-26
16	8122705	7970546	NM_152726	EFHA1	0.840307	3.796386e-29	6.577997e-25	4.111248e-26
17	8122705	7913814	NM_015484	SYF2	0.838593	6.284233e-29	1.088869e-24	6.405112e-26
18	8122705	8104449	NM_012073	CCT5	0.837706	8.136201e-29	1.409760e-24	7.831997e-26
19	8122705	8130765	BC112329	FAM103A1	0.837101	9.695821e-29	1.679995e-24	8.842079e-26
20	8122705	7993872	NM_003366	UQCRC2	0.835171	1.688693e-28	2.925998e-24	1.462999e-25
21	8122705	7985488	BC112329	FAM103A1	0.834782	1.886801e-28	3.269259e-24	1.556790e-25
22	8122705	7976189	NM_002802	PSMC1	0.834276	2.178469e-28	3.774633e-24	1.715742e-25
23	8122705	7902634	NM_025065	RPF1	0.830550	6.192196e-28	1.072922e-23	4.664877e-25
24	8122705	8080923	NM_002802	PSMC1	0.829905	7.400598e-28	1.282302e-23	5.342923e-25
25	8122705	7928752	NM_014394	GHITM	0.829721	7.784923e-28	1.348894e-23	5.395575e-25
26	8122705	7974303	NM_030755	TMX1	0.829676	7.882311e-28	1.365768e-23	5.252954e-25
27	8122705	7962935	NM_212461	PRKAG1	0.829506	8.259561e-28	1.431134e-23	5.300497e-25
28	8122705	8131975	NM_006024	TAX1BP1	0.828037	1.235111e-27	2.140076e-23	7.643129e-25
29	8122705	8055672	NM_015702	MMADHC	0.827946	1.265929e-27	2.193476e-23	7.563709e-25
30	8122705	7920492	NM_001098616	C1orf43	0.827370	1.480410e-27	2.565106e-23	8.550354e-25
31	8122705	8042270	NM_001001521	UGP2	0.827187	1.556045e-27	2.696158e-23	8.697285e-25
32	8122705	8107613	NM_003100	SNX2	0.827126	1.582046e-27	2.741212e-23	8.566287e-25
33	8122705	8056943	NM_030650	KIAA1715	0.826238	2.010780e-27	3.484079e-23	1.055781e-24
34	8122705	8017210	NM_003916	AP1S2	0.824939	2.848543e-27	4.935670e-23	1.451668e-24
35	8122705	7943162	BC012298	C11orf54	0.824929	2.856646e-27	4.949711e-23	1.414203e-24
36	8122705	7930276	NM_014720	SLK	0.822072	6.085720e-27	1.054473e-22	2.929091e-24
37	8122705	8128669	NM_014028	OSTM1	0.821070	7.909166e-27	1.370421e-22	3.703841e-24
38	8122705	8112967	NM_174909	TMEM167A	0.820947	8.166869e-27	1.415073e-22	3.723877e-24
39	8122705	7975113	NM_145165	CHURC1	0.820474	9.235358e-27	1.600210e-22	4.103104e-24
40	8122705	7979698	NM_015994	ATP6V1D	0.820053	1.030165e-26	1.784966e-22	4.462415e-24
41	8122705	8070655	NM_001025204	U2AF1	0.818103	1.702217e-26	2.949432e-22	7.193736e-24
42	8122705	8088718	NM_003968	UBA3	0.817724	1.875338e-26	3.249398e-22	7.736661e-24
43	8122705	8106252	NM_000521	HEXB	0.816602	2.495380e-26	4.323745e-22	1.005522e-23
44	8122705	8081055	NM_014043	CHMP2B	0.816471	2.579368e-26	4.469271e-22	1.015743e-23
45	8122705	8095773	NM_003715	USO1	0.816022	2.889846e-26	5.007236e-22	1.112719e-23
46	8122705	8089527	NM_022488	ATG3	0.815199	3.556825e-26	6.162911e-22	1.339763e-23
47	8122705	7964250	NM_006601	PTGES3	0.814411	4.333619e-26	7.508862e-22	1.597630e-23
48	8122705	8150714	NM_052937	PCMTD1	0.814246	4.516457e-26	7.825665e-22	1.630347e-23
49	8122705	7957177	NM_014999	RAB21	0.812119	7.661476e-26	1.327504e-21	2.709192e-23
50	8122705	8042291	NM_203437	AFTPH	0.810706	1.084375e-25	1.878897e-21	3.757794e-23

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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