[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 12916.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12916	8104449	NM_012073	CCT5		chaperonin containing TCP1, subunit 5 (epsilon)

Fetching correlation data, please wait...
Getting list of correlations for id 12916.
Getting list of p-values for id 12916.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.097 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8104449	7975976	NM_012111	AHSA1	0.862277	3.337897e-32	5.783574e-28	5.783574e-28
2	8104449	8091048	NR_023350	COPB2	0.855713	3.084533e-31	5.344571e-27	2.672286e-27
3	8104449	8122705	NM_005389	PCMT1	0.837706	8.136201e-29	1.409760e-24	4.699198e-25
4	8104449	7997230	NM_002811	PSMD7	0.835250	1.650967e-28	2.860631e-24	7.151577e-25
5	8104449	7980463	NM_012245	SNW1	0.830758	5.845881e-28	1.012916e-23	2.025832e-24
6	8104449	8090490	NM_002950	RPN1	0.828757	1.014532e-27	1.757879e-23	2.929798e-24
7	8104449	7928752	NM_014394	GHITM	0.826746	1.753057e-27	3.037522e-23	4.339318e-24
8	8104449	8140828	NM_003130	SRI	0.826496	1.875335e-27	3.249393e-23	4.061741e-24
9	8104449	7911619	NM_002074	GNB1	0.824121	3.542703e-27	6.138441e-23	6.820491e-24
10	8104449	8116622	NM_003804	RIPK1	0.823327	4.373028e-27	7.577145e-23	7.577145e-24
11	8104449	8132580	NM_006555	YKT6	0.823196	4.526889e-27	7.843741e-23	7.130674e-24
12	8104449	7976189	NM_002802	PSMC1	0.822763	5.074709e-27	8.792948e-23	7.327457e-24
13	8104449	8139706	NM_014302	SEC61G	0.821435	7.189615e-27	1.245745e-22	9.582650e-24
14	8104449	7936614	NM_003750	EIF3A	0.819091	1.320699e-26	2.288375e-22	1.634554e-23
15	8104449	7942553	NM_014752	SPCS2	0.816919	2.302380e-26	3.989335e-22	2.659556e-23
16	8104449	8178322	NM_006937	SUMO2	0.816671	2.452111e-26	4.248773e-22	2.655483e-23
17	8104449	8080923	NM_002802	PSMC1	0.815133	3.616229e-26	6.265839e-22	3.685788e-23
18	8104449	8048234	NM_152862	ARPC2	0.812993	6.171620e-26	1.069357e-21	5.940870e-23
19	8104449	8160914	NM_007126	VCP	0.812570	6.853131e-26	1.187442e-21	6.249694e-23
20	8104449	8093112	NM_015562	UBXN7	0.812524	6.931448e-26	1.201012e-21	6.005060e-23
21	8104449	7977657	NM_031314	HNRNPC	0.810666	1.095009e-25	1.897322e-21	9.034866e-23
22	8104449	8018315	NM_006937	SUMO2	0.810524	1.133821e-25	1.964571e-21	8.929870e-23
23	8104449	8139421	NM_012412	H2AFV	0.809811	1.349358e-25	2.338032e-21	1.016536e-22
24	8104449	7933164	NM_004966	HNRNPF	0.808917	1.676623e-25	2.905085e-21	1.210452e-22
25	8104449	8099340	NM_017491	WDR1	0.806828	2.772084e-25	4.803190e-21	1.921276e-22
26	8104449	8078738	NM_005109	OXSR1	0.805878	3.477602e-25	6.025640e-21	2.317554e-22
27	8104449	7944285	NM_001655	ARCN1	0.804796	4.495091e-25	7.788643e-21	2.884683e-22
28	8104449	8003758	NM_000430	PAFAH1B1	0.804557	4.757135e-25	8.242687e-21	2.943817e-22
29	8104449	7931728	NM_015155	LARP4B	0.804486	4.836646e-25	8.380457e-21	2.889813e-22
30	8104449	8132070	NM_002047	GARS	0.803711	5.806563e-25	1.006103e-20	3.353677e-22
31	8104449	8094704	NM_005339	UBE2K	0.803613	5.941642e-25	1.029508e-20	3.320995e-22
32	8104449	8148333	NM_015137	EFR3A	0.803207	6.535076e-25	1.132333e-20	3.538540e-22
33	8104449	7955890	NM_031157	HNRNPA1	0.802641	7.459322e-25	1.292477e-20	3.916596e-22
34	8104449	8006690	NM_012138	AATF	0.801994	8.674527e-25	1.503035e-20	4.420692e-22
35	8104449	8147172	NM_003909	CPNE3	0.800300	1.284248e-24	2.225217e-20	6.357763e-22
36	8104449	8151842	NM_015496	KIAA1429	0.799972	1.385039e-24	2.399856e-20	6.666267e-22
37	8104449	7967976	NM_005870	SAP18	0.799257	1.632299e-24	2.828284e-20	7.644011e-22
38	8104449	8110894	NM_017755	NSUN2	0.797787	2.282610e-24	3.955078e-20	1.040810e-21
39	8104449	7934367	NM_004034	ANXA7	0.797020	2.716141e-24	4.706258e-20	1.206733e-21
40	8104449	7978718	NM_006364	SEC23A	0.796651	2.952488e-24	5.115775e-20	1.278944e-21
41	8104449	7982531	NM_006305	ANP32A	0.795825	3.556590e-24	6.162503e-20	1.503049e-21
42	8104449	8115168	NM_018047	RBM22	0.794662	4.615418e-24	7.997135e-20	1.904080e-21
43	8104449	7918345	NM_002790	PSMA5	0.794040	5.301360e-24	9.185667e-20	2.136202e-21
44	8104449	7980523	NM_015859	GTF2A1	0.793678	5.746513e-24	9.956982e-20	2.262951e-21
45	8104449	8130952	NM_002793	PSMB1	0.793568	5.888374e-24	1.020279e-19	2.267286e-21
46	8104449	7995580	GENSCAN00000014354		0.792660	7.198547e-24	1.247292e-19	2.711505e-21
47	8104449	8027592	NM_001114093	LSM14A	0.792498	7.461675e-24	1.292884e-19	2.750818e-21
48	8104449	8101324	NM_031370	HNRNPD	0.792089	8.165583e-24	1.414851e-19	2.947605e-21
49	8104449	8138773	NM_022170	EIF4H	0.792085	8.172142e-24	1.415987e-19	2.889769e-21
50	8104449	8048551	NM_005876	SPEG	-0.791348	9.610326e-24	1.665181e-19	3.330362e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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