[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15557	8090490	NM_002950	RPN1		ribophorin I

Fetching correlation data, please wait...
Getting list of correlations for id 15557.
Getting list of p-values for id 15557.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.153 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8090490	8115168	NM_018047	RBM22	0.861911	3.790431e-32	6.567680e-28	6.567680e-28
2	8090490	8160914	NM_007126	VCP	0.844862	9.663263e-30	1.674354e-25	8.371768e-26
3	8090490	8099340	NM_017491	WDR1	0.839914	4.263469e-29	7.387312e-25	2.462437e-25
4	8090490	7911619	NM_002074	GNB1	0.836653	1.103622e-28	1.912246e-24	4.780616e-25
5	8090490	8116622	NM_003804	RIPK1	0.833097	3.040307e-28	5.267940e-24	1.053588e-24
6	8090490	8104449	NM_012073	CCT5	0.828757	1.014532e-27	1.757879e-23	2.929798e-24
7	8090490	7923659	NM_032833	PPP1R15B	0.826549	1.848765e-27	3.203356e-23	4.576222e-24
8	8090490	7978718	NM_006364	SEC23A	0.820901	8.265605e-27	1.432181e-22	1.790227e-23
9	8090490	7944285	NM_001655	ARCN1	0.820414	9.379745e-27	1.625228e-22	1.805809e-23
10	8090490	8091048	NR_023350	COPB2	0.819405	1.218166e-26	2.110716e-22	2.110716e-23
11	8090490	8093112	NM_015562	UBXN7	0.817864	1.809617e-26	3.135523e-22	2.850476e-23
12	8090490	7934367	NM_004034	ANXA7	0.817350	2.063274e-26	3.575035e-22	2.979196e-23
13	8090490	7903294	NM_033055	HIAT1	0.817007	2.251622e-26	3.901385e-22	3.001066e-23
14	8090490	8065832	NM_015638	TRPC4AP	0.812117	7.666144e-26	1.328313e-21	9.487948e-23
15	8090490	8164883	NM_033161	SURF4	0.808817	1.717539e-25	2.975980e-21	1.983987e-22
16	8090490	8019250	NM_000918	P4HB	0.808183	2.002006e-25	3.468876e-21	2.168047e-22
17	8090490	7961532	NM_001175	ARHGDIB	0.807893	2.147106e-25	3.720290e-21	2.188406e-22
18	8090490	8019762			0.805399	3.896840e-25	6.752054e-21	3.751141e-22
19	8090490	8132580	NM_006555	YKT6	0.801290	1.021519e-24	1.769987e-20	9.315719e-22
20	8090490	7980463	NM_012245	SNW1	0.800069	1.354583e-24	2.347086e-20	1.173543e-21
21	8090490	7975976	NM_012111	AHSA1	0.797460	2.458610e-24	4.260034e-20	2.028588e-21
22	8090490	8086028	NM_000404	GLB1	0.796369	3.146405e-24	5.451776e-20	2.478080e-21
23	8090490	8018315	NM_006937	SUMO2	0.795405	3.908180e-24	6.771704e-20	2.944219e-21
24	8090490	8003758	NM_000430	PAFAH1B1	0.794702	4.573755e-24	7.924945e-20	3.302060e-21
25	8090490	8157125	NM_002874	RAD23B	0.794445	4.844499e-24	8.394064e-20	3.357626e-21
26	8090490	7908543	NM_133494	NEK7	0.794065	5.272557e-24	9.135759e-20	3.513754e-21
27	8090490	8168500	NM_000291	PGK1	0.793269	6.292188e-24	1.090247e-19	4.037953e-21
28	8090490	8110169	NM_014613	FAF2	0.791323	9.663002e-24	1.674308e-19	5.979673e-21
29	8090490	8009932	NM_013260	SAP30BP	0.791251	9.816155e-24	1.700845e-19	5.864984e-21
30	8090490	8074251	NM_001696	ATP6V1E1	0.789505	1.436475e-23	2.488980e-19	8.296601e-21
31	8090490	7945132	NM_002017	FLI1	0.788878	1.645582e-23	2.851300e-19	9.197741e-21
32	8090490	8138773	NM_022170	EIF4H	0.787333	2.295910e-23	3.978124e-19	1.243164e-20
33	8090490	7949496	NM_005507	CFL1	0.785466	3.420296e-23	5.926346e-19	1.795863e-20
34	8090490	8147172	NM_003909	CPNE3	0.785448	3.433408e-23	5.949065e-19	1.749725e-20
35	8090490	7938563	NM_001178	ARNTL	0.784656	4.061411e-23	7.037207e-19	2.010630e-20
36	8090490	8051443	NM_003162	STRN	0.784111	4.556157e-23	7.894453e-19	2.192904e-20
37	8090490	7913169	NM_004930	CAPZB	0.783939	4.725111e-23	8.187199e-19	2.212757e-20
38	8090490	8166219	NM_032796	SYAP1	0.783860	4.804014e-23	8.323916e-19	2.190504e-20
39	8090490	8083282	NM_032383	HPS3	0.782417	6.502869e-23	1.126752e-18	2.889108e-20
40	8090490	7907773	NM_015602	TOR1AIP1	0.782395	6.533415e-23	1.132045e-18	2.830112e-20
41	8090490	7981249	NM_032233	SETD3	0.782370	6.566936e-23	1.137853e-18	2.775251e-20
42	8090490	7926207	NM_006023	CDC123	0.782317	6.640137e-23	1.150537e-18	2.739373e-20
43	8090490	8163784	NM_012164	FBXW2	0.781937	7.188582e-23	1.245566e-18	2.896664e-20
44	8090490	7931728	NM_015155	LARP4B	0.781907	7.233644e-23	1.253374e-18	2.848576e-20
45	8090490	8062213	NM_016436	PHF20	0.781727	7.509275e-23	1.301132e-18	2.891405e-20
46	8090490	8171684	NM_031892	SH3KBP1	0.780844	9.022477e-23	1.563325e-18	3.398532e-20
47	8090490	7959282	NM_194271	RNF34	0.780793	9.117703e-23	1.579824e-18	3.361329e-20
48	8090490	8008922	NM_003620	PPM1D	0.780730	9.238813e-23	1.600809e-18	3.335019e-20
49	8090490	7980547	NM_005065	SEL1L	0.780556	9.577248e-23	1.659450e-18	3.386632e-20
50	8090490	7952557	NM_003139	SRPR	0.780312	1.007383e-22	1.745492e-18	3.490984e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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