[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13027	8086028	NM_000404	GLB1		galactosidase, beta 1

Fetching correlation data, please wait...
Getting list of correlations for id 13027.
Getting list of p-values for id 13027.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.141 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8086028	7949496	NM_005507	CFL1	0.806515	2.987430e-25	5.176320e-21	5.176320e-21
2	8086028	7950473	NM_004041	ARRB1	0.804782	4.510380e-25	7.815136e-21	3.907568e-21
3	8086028	7955908	NM_005337	NCKAP1L	0.803604	5.953722e-25	1.031601e-20	3.438671e-21
4	8086028	8099340	NM_017491	WDR1	0.803153	6.617808e-25	1.146668e-20	2.866669e-21
5	8086028	8138773	NM_022170	EIF4H	0.800166	1.324596e-24	2.295128e-20	4.590256e-21
6	8086028	7952557	NM_003139	SRPR	0.797414	2.484247e-24	4.304454e-20	7.174090e-21
7	8086028	8015460	NM_001096	ACLY	0.797158	2.632517e-24	4.561363e-20	6.516232e-21
8	8086028	8090490	NM_002950	RPN1	0.796369	3.146405e-24	5.451776e-20	6.814720e-21
9	8086028	7911619	NM_002074	GNB1	0.793852	5.528116e-24	9.578567e-20	1.064285e-20
10	8086028	8115168	NM_018047	RBM22	0.791068	1.021813e-23	1.770495e-19	1.770495e-20
11	8086028	7964701	NM_002076	GNS	0.790013	1.286392e-23	2.228932e-19	2.026302e-20
12	8086028	7898328	NM_001114600	C1orf144	0.788304	1.863087e-23	3.228171e-19	2.690143e-20
13	8086028	8164883	NM_033161	SURF4	0.788239	1.889486e-23	3.273912e-19	2.518394e-20
14	8086028	8160914	NM_007126	VCP	0.788137	1.931446e-23	3.346617e-19	2.390441e-20
15	8086028	7995843	NM_014669	NUP93	0.785555	3.356061e-23	5.815046e-19	3.876697e-20
16	8086028	8150112	NM_000637	GSR	0.785036	3.746923e-23	6.492293e-19	4.057683e-20
17	8086028	8003180	NM_001145548	ZDHHC7	0.784635	4.079012e-23	7.067704e-19	4.157473e-20
18	8086028	8082478	NM_016128	COPG	0.781611	7.693195e-23	1.333000e-18	7.405555e-20
19	8086028	8133434	NM_022170	EIF4H	0.780114	1.049452e-22	1.818386e-18	9.570454e-20
20	8086028	8064522	NM_174856	IDH3B	0.777224	1.897518e-22	3.287829e-18	1.643915e-19
21	8086028	7913169	NM_004930	CAPZB	0.777056	1.963541e-22	3.402228e-18	1.620109e-19
22	8086028	8073192	NM_006003	UQCRFS1	0.776013	2.425936e-22	4.203419e-18	1.910645e-19
23	8086028	8132592	NM_002541	OGDH	0.775601	2.636266e-22	4.567857e-18	1.986025e-19
24	8086028	8019250	NM_000918	P4HB	0.773490	4.026679e-22	6.977026e-18	2.907094e-19
25	8086028	8076403	NM_000262	NAGA	0.772598	4.809608e-22	8.333608e-18	3.333443e-19
26	8086028	7915504	NM_022821	ELOVL1	0.770231	7.674963e-22	1.329841e-17	5.114772e-19
27	8086028	7967976	NM_005870	SAP18	0.767554	1.293501e-21	2.241250e-17	8.300924e-19
28	8086028	7977803	NM_001077351	RBM23	0.765220	2.027809e-21	3.513584e-17	1.254851e-18
29	8086028	8040927	NM_013392	NRBP1	0.765109	2.070990e-21	3.588404e-17	1.237381e-18
30	8086028	7990211	NM_000520	HEXA	0.763737	2.690513e-21	4.661852e-17	1.553951e-18
31	8086028	8163383	NM_022486	SUSD1	0.761793	3.885963e-21	6.733207e-17	2.172002e-18
32	8086028	7931728	NM_015155	LARP4B	0.760056	5.381262e-21	9.324112e-17	2.913785e-18
33	8086028	8102848	NM_030648	SETD7	0.759982	5.456629e-21	9.454702e-17	2.865061e-18
34	8086028	7923659	NM_032833	PPP1R15B	0.759731	5.717708e-21	9.907072e-17	2.913845e-18
35	8086028	7903803	NM_006621	AHCYL1	0.759214	6.295843e-21	1.090881e-16	3.116802e-18
36	8086028	8008113	NM_005831	CALCOCO2	0.759068	6.468214e-21	1.120747e-16	3.113187e-18
37	8086028	8076465	NM_032311	POLDIP3	0.758264	7.508491e-21	1.300996e-16	3.516206e-18
38	8086028	8065832	NM_015638	TRPC4AP	0.758234	7.550345e-21	1.308248e-16	3.442759e-18
39	8086028	8132580	NM_006555	YKT6	0.757824	8.144473e-21	1.411193e-16	3.618443e-18
40	8086028	8016099	NM_004247	EFTUD2	0.756601	1.020118e-20	1.767559e-16	4.418898e-18
41	8086028	7956593	NM_006812	OS9	0.756146	1.108792e-20	1.921203e-16	4.685861e-18
42	8086028	8034420	NM_000528	MAN2B1	0.756098	1.118701e-20	1.938374e-16	4.615176e-18
43	8086028	8019211	NM_017921	NPLOC4	0.755529	1.241310e-20	2.150819e-16	5.001904e-18
44	8086028	8104449	NM_012073	CCT5	0.754896	1.393224e-20	2.414039e-16	5.486453e-18
45	8086028	7977786	NM_003982	SLC7A7	0.753134	1.917297e-20	3.322101e-16	7.382446e-18
46	8086028	7940051	NM_015457	ZDHHC5	0.753061	1.943048e-20	3.366719e-16	7.318954e-18
47	8086028	7997230	NM_002811	PSMD7	0.753035	1.952006e-20	3.382240e-16	7.196255e-18
48	8086028	8080184	NM_000688	ALAS1	0.752495	2.151354e-20	3.727652e-16	7.765941e-18
49	8086028	8116622	NM_003804	RIPK1	0.752169	2.281524e-20	3.953196e-16	8.067747e-18
50	8086028	8077550	NM_001077525	MTMR14	0.752127	2.298659e-20	3.982886e-16	7.965773e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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