[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 14040.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14040	8076465	NM_032311	POLDIP3		polymerase (DNA-directed), delta interacting protein 3

Fetching correlation data, please wait...
Getting list of correlations for id 14040.
Getting list of p-values for id 14040.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.123 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8076465	8009164	NM_005828	DCAF7	0.849312	2.431739e-30	4.213474e-26	4.213474e-26
2	8076465	8029029	NM_007040	HNRNPUL1	0.839734	4.496600e-29	7.791259e-25	3.895630e-25
3	8076465	8024019	NM_002819	PTBP1	0.831824	4.345410e-28	7.529292e-24	2.509764e-24
4	8076465	8013696	NM_014680	KIAA0100	0.824804	2.953454e-27	5.117450e-23	1.279362e-23
5	8076465	8015460	NM_001096	ACLY	0.816377	2.642026e-26	4.577839e-22	9.155678e-23
6	8076465	7950473	NM_004041	ARRB1	0.814728	4.002911e-26	6.935844e-22	1.155974e-22
7	8076465	7949496	NM_005507	CFL1	0.809298	1.528344e-25	2.648162e-21	3.783089e-22
8	8076465	8052925	NM_144582	TEX261	0.807006	2.656372e-25	4.602695e-21	5.753369e-22
9	8076465	7952557	NM_003139	SRPR	0.803723	5.789703e-25	1.003182e-20	1.114647e-21
10	8076465	8099340	NM_017491	WDR1	0.802758	7.258742e-25	1.257722e-20	1.257722e-21
11	8076465	8116096	NM_016222	DDX41	0.800470	1.234886e-24	2.139687e-20	1.945170e-21
12	8076465	8066716	NM_133171	ELMO2	0.799221	1.645608e-24	2.851345e-20	2.376121e-21
13	8076465	8037005	NM_000660	TGFB1	0.798202	2.077106e-24	3.599002e-20	2.768463e-21
14	8076465	7939767	NM_003682	MADD	0.797217	2.597558e-24	4.500788e-20	3.214849e-21
15	8076465	7947681	NM_004308	ARHGAP1	0.791790	8.720629e-24	1.511023e-19	1.007349e-20
16	8076465	7905700	NM_014847	UBAP2L	0.790074	1.269363e-23	2.199426e-19	1.374641e-20
17	8076465	7955908	NM_005337	NCKAP1L	0.787726	2.110079e-23	3.656134e-19	2.150667e-20
18	8076465	8068974	NM_003274	TRAPPC10	0.784452	4.239840e-23	7.346371e-19	4.081317e-20
19	8076465	7998033	NM_014972	TCF25	0.782512	6.375548e-23	1.104691e-18	5.814165e-20
20	8076465	8164883	NM_033161	SURF4	0.782425	6.492655e-23	1.124982e-18	5.624912e-20
21	8076465	8082478	NM_016128	COPG	0.782133	6.900104e-23	1.195581e-18	5.693243e-20
22	8076465	7913169	NM_004930	CAPZB	0.781220	8.345812e-23	1.446079e-18	6.573086e-20
23	8076465	8172876	NM_006306	SMC1A	0.780076	1.057662e-22	1.832611e-18	7.967874e-20
24	8076465	8008139	NM_023079	UBE2Z	0.779920	1.092143e-22	1.892356e-18	7.884815e-20
25	8076465	7948744	NM_198335	GANAB	0.778504	1.461400e-22	2.532168e-18	1.012867e-19
26	8076465	8053909	NM_014014	SNRNP200	0.777103	1.944737e-22	3.369645e-18	1.296017e-19
27	8076465	7956166	NM_015292	ESYT1	0.775522	2.678448e-22	4.640947e-18	1.718869e-19
28	8076465	8093685	NM_002111	HTT	0.775361	2.767126e-22	4.794599e-18	1.712357e-19
29	8076465	8084439	NM_182917	EIF4G1	0.774835	3.076089e-22	5.329940e-18	1.837910e-19
30	8076465	8160914	NM_007126	VCP	0.773263	4.213450e-22	7.300645e-18	2.433548e-19
31	8076465	8019250	NM_000918	P4HB	0.773112	4.341985e-22	7.523357e-18	2.426889e-19
32	8076465	8178050	NM_001320	CSNK2B	0.772770	4.647921e-22	8.053453e-18	2.516704e-19
33	8076465	7914834	NM_002794	PSMB2	0.772349	5.053329e-22	8.755903e-18	2.653304e-19
34	8076465	8030881	NM_014225	PPP2R1A	0.770659	7.055731e-22	1.222546e-17	3.595725e-19
35	8076465	8011141	NM_006445	PRPF8	0.770620	7.110101e-22	1.231967e-17	3.519906e-19
36	8076465	8157283	NM_004697	PRPF4	0.770429	7.382376e-22	1.279144e-17	3.553179e-19
37	8076465	8118218	NM_001320	CSNK2B	0.769521	8.820929e-22	1.528402e-17	4.130817e-19
38	8076465	7940051	NM_015457	ZDHHC5	0.767282	1.363468e-21	2.362482e-17	6.217057e-19
39	8076465	7899688	NM_012316	KPNA6	0.767248	1.372400e-21	2.377958e-17	6.097327e-19
40	8076465	7925851	NM_014023	WDR37	0.766429	1.607409e-21	2.785157e-17	6.962893e-19
41	8076465	8062349	NM_002951	RPN2	0.762976	3.108248e-21	5.385662e-17	1.313576e-18
42	8076465	8075343	NM_005877	SF3A1	0.761638	4.001143e-21	6.932781e-17	1.650662e-18
43	8076465	8064351	NM_177559	CSNK2A1	0.761448	4.146941e-21	7.185404e-17	1.671024e-18
44	8076465	7960594	NM_001273	CHD4	0.760921	4.577812e-21	7.931974e-17	1.802721e-18
45	8076465	8132819	NM_006060	IKZF1	0.759530	5.936328e-21	1.028588e-16	2.285750e-18
46	8076465	8082408	NM_013336	SEC61A1	0.758774	6.832016e-21	1.183783e-16	2.573442e-18
47	8076465	7970287	NM_005561	LAMP1	0.758468	7.229967e-21	1.252736e-16	2.665397e-18
48	8076465	8086028	NM_000404	GLB1	0.758264	7.508491e-21	1.300996e-16	2.710409e-18
49	8076465	7898328	NM_001114600	C1orf144	0.754750	1.430784e-20	2.479119e-16	5.059426e-18
50	8076465	8172914	NM_031407	HUWE1	0.754469	1.505576e-20	2.608712e-16	5.217423e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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