[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14448	8015460	NM_001096	ACLY		ATP citrate lyase

Fetching correlation data, please wait...
Getting list of correlations for id 14448.
Getting list of p-values for id 14448.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.139 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8015460	8024019	NM_002819	PTBP1	0.863552	2.139074e-32	3.706373e-28	3.706373e-28
2	8015460	8172876	NM_006306	SMC1A	0.828851	9.888099e-28	1.713311e-23	8.566554e-24
3	8015460	8019250	NM_000918	P4HB	0.825300	2.586701e-27	4.481977e-23	1.493992e-23
4	8015460	8076465	NM_032311	POLDIP3	0.816377	2.642026e-26	4.577839e-22	1.144460e-22
5	8015460	8074647	NM_058004	PI4KA	0.811053	9.958847e-26	1.725569e-21	3.451139e-22
6	8015460	8009164	NM_005828	DCAF7	0.810910	1.031664e-25	1.787565e-21	2.979275e-22
7	8015460	8025697	NM_012218	ILF3	0.810338	1.186387e-25	2.055653e-21	2.936646e-22
8	8015460	8029029	NM_007040	HNRNPUL1	0.806716	2.847377e-25	4.933650e-21	6.167063e-22
9	8015460	7952557	NM_003139	SRPR	0.803592	5.970801e-25	1.034561e-20	1.149512e-21
10	8015460	8037005	NM_000660	TGFB1	0.799617	1.502862e-24	2.604009e-20	2.604009e-21
11	8015460	8139433	NM_033054	MYO1G	0.799232	1.641487e-24	2.844204e-20	2.585640e-21
12	8015460	8086028	NM_000404	GLB1	0.797158	2.632517e-24	4.561363e-20	3.801135e-21
13	8015460	7955908	NM_005337	NCKAP1L	0.794402	4.890566e-24	8.473884e-20	6.518373e-21
14	8015460	7898328	NM_001114600	C1orf144	0.794176	5.143949e-24	8.912921e-20	6.366372e-21
15	8015460	7949496	NM_005507	CFL1	0.793177	6.420661e-24	1.112508e-19	7.416719e-21
16	8015460	7899688	NM_012316	KPNA6	0.787883	2.039728e-23	3.534236e-19	2.208898e-20
17	8015460	8084439	NM_182917	EIF4G1	0.787125	2.400647e-23	4.159600e-19	2.446824e-20
18	8015460	8164883	NM_033161	SURF4	0.785956	3.081525e-23	5.339358e-19	2.966310e-20
19	8015460	8160914	NM_007126	VCP	0.777448	1.813110e-22	3.141575e-18	1.653461e-19
20	8015460	8053909	NM_014014	SNRNP200	0.776650	2.132020e-22	3.694152e-18	1.847076e-19
21	8015460	7900030	NM_012199	EIF2C1	0.774268	3.446897e-22	5.972438e-18	2.844018e-19
22	8015460	7976876	NM_001376	DYNC1H1	0.773910	3.702468e-22	6.415267e-18	2.916030e-19
23	8015460	8069910	NM_020706	SFRS15	0.772515	4.889832e-22	8.472612e-18	3.683744e-19
24	8015460	8158783	NM_005085	NUP214	0.772350	5.051950e-22	8.753514e-18	3.647298e-19
25	8015460	7995843	NM_014669	NUP93	0.771296	6.223811e-22	1.078400e-17	4.313599e-19
26	8015460	7914296	NM_001020658	PUM1	0.768648	1.046012e-21	1.812426e-17	6.970868e-19
27	8015460	8008213	NM_007067	MYST2	0.767366	1.341596e-21	2.324583e-17	8.609568e-19
28	8015460	7937900	NM_003156	STIM1	0.766969	1.448557e-21	2.509915e-17	8.963983e-19
29	8015460	7939767	NM_003682	MADD	0.765547	1.904562e-21	3.300035e-17	1.137943e-18
30	8015460	7958644	NM_170665	ATP2A2	0.764628	2.270600e-21	3.934268e-17	1.311423e-18
31	8015460	8070988	NM_003906	MCM3AP	0.764471	2.339571e-21	4.053774e-17	1.307669e-18
32	8015460	7990511	NM_002833	PTPN9	0.763739	2.689692e-21	4.660430e-17	1.456384e-18
33	8015460	8019211	NM_017921	NPLOC4	0.762503	3.398931e-21	5.889328e-17	1.784645e-18
34	8015460	8176026	NM_001456	FLNA	0.761966	3.761281e-21	6.517172e-17	1.916815e-18
35	8015460	8179504	NM_005104	BRD2	0.759935	5.504719e-21	9.538026e-17	2.725150e-18
36	8015460	7981249	NM_032233	SETD3	0.759211	6.299377e-21	1.091493e-16	3.031925e-18
37	8015460	7997099	NM_012426	SF3B3	0.758933	6.632687e-21	1.149246e-16	3.106070e-18
38	8015460	8164607	NM_015033	FNBP1	0.758565	7.101739e-21	1.230518e-16	3.238206e-18
39	8015460	8005903	NM_003170	SUPT6H	0.758406	7.313943e-21	1.267287e-16	3.249453e-18
40	8015460	8087271	NM_017730	QRICH1	0.756524	1.034648e-20	1.792735e-16	4.481837e-18
41	8015460	8066668	NM_020967	NCOA5	0.756399	1.058643e-20	1.834310e-16	4.473927e-18
42	8015460	8099340	NM_017491	WDR1	0.756166	1.104719e-20	1.914146e-16	4.557491e-18
43	8015460	8145977	NM_021623	PLEKHA2	0.754158	1.593234e-20	2.760596e-16	6.419990e-18
44	8015460	8016077	NM_001002909	GPATCH8	0.753985	1.643950e-20	2.848472e-16	6.473801e-18
45	8015460	7987840	NM_015289	VPS39	0.753316	1.855508e-20	3.215038e-16	7.144530e-18
46	8015460	7970287	NM_005561	LAMP1	0.752387	2.193795e-20	3.801188e-16	8.263452e-18
47	8015460	7905700	NM_014847	UBAP2L	0.750416	3.121918e-20	5.409346e-16	1.150925e-17
48	8015460	8171684	NM_031892	SH3KBP1	0.748526	4.366059e-20	7.565071e-16	1.576056e-17
49	8015460	7948696	NM_004739	MTA2	0.748392	4.470129e-20	7.745392e-16	1.580692e-17
50	8015460	8118580	NM_005104	BRD2	0.746898	5.813657e-20	1.007332e-15	2.014665e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation