[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16882.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16882	7949496	NM_005507	CFL1		cofilin 1 (non-muscle)

Fetching correlation data, please wait...
Getting list of correlations for id 16882.
Getting list of p-values for id 16882.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.098 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7949496	8099340	NM_017491	WDR1	0.884851	5.999161e-36	1.039475e-31	1.039475e-31
2	7949496	7911619	NM_002074	GNB1	0.858602	1.175274e-31	2.036398e-27	1.018199e-27
3	7949496	8160914	NM_007126	VCP	0.847228	4.666080e-30	8.084917e-26	2.694972e-26
4	7949496	7955908	NM_005337	NCKAP1L	0.843170	1.614649e-29	2.797703e-25	6.994258e-26
5	7949496	7913169	NM_004930	CAPZB	0.830061	7.088346e-28	1.228198e-23	2.456395e-24
6	7949496	7952557	NM_003139	SRPR	0.819889	1.074832e-26	1.862361e-22	3.103936e-23
7	7949496	8028524	NM_004924	ACTN4	0.818920	1.380081e-26	2.391267e-22	3.416095e-23
8	7949496	8167965	NM_002444	MSN	0.818295	1.620634e-26	2.808073e-22	3.510091e-23
9	7949496	8019250	NM_000918	P4HB	0.818156	1.679297e-26	2.909719e-22	3.233021e-23
10	7949496	8115168	NM_018047	RBM22	0.817068	2.216853e-26	3.841142e-22	3.841142e-23
11	7949496	8138773	NM_022170	EIF4H	0.813733	5.133935e-26	8.895570e-22	8.086882e-23
12	7949496	8076465	NM_032311	POLDIP3	0.809298	1.528344e-25	2.648162e-21	2.206802e-22
13	7949496	8164883	NM_033161	SURF4	0.808816	1.717832e-25	2.976488e-21	2.289606e-22
14	7949496	8024019	NM_002819	PTBP1	0.808017	2.083541e-25	3.610151e-21	2.578679e-22
15	7949496	8086028	NM_000404	GLB1	0.806515	2.987430e-25	5.176320e-21	3.450880e-22
16	7949496	7898328	NM_001114600	C1orf144	0.806490	3.005387e-25	5.207434e-21	3.254646e-22
17	7949496	8007471	NM_031858	NBR1	0.803514	6.080184e-25	1.053513e-20	6.197138e-22
18	7949496	7970287	NM_005561	LAMP1	0.800979	1.097822e-24	1.902197e-20	1.056776e-21
19	7949496	8007505	NM_004941	DHX8	0.796439	3.096889e-24	5.365980e-20	2.824200e-21
20	7949496	7966127	NM_003006	SELPLG	0.796166	3.293592e-24	5.706807e-20	2.853403e-21
21	7949496	7949765	NM_001008709	PPP1CA	0.794740	4.535683e-24	7.858978e-20	3.742371e-21
22	7949496	8009164	NM_005828	DCAF7	0.793642	5.791616e-24	1.003513e-19	4.561424e-21
23	7949496	8015460	NM_001096	ACLY	0.793177	6.420661e-24	1.112508e-19	4.836991e-21
24	7949496	8171684	NM_031892	SH3KBP1	0.792384	7.651466e-24	1.325770e-19	5.524040e-21
25	7949496	8137979	NM_001101	ACTB	0.791863	8.581693e-24	1.486950e-19	5.947800e-21
26	7949496	7948744	NM_198335	GANAB	0.788276	1.874243e-23	3.247501e-19	1.249039e-20
27	7949496	7960594	NM_001273	CHD4	0.786718	2.619391e-23	4.538619e-19	1.680970e-20
28	7949496	8090490	NM_002950	RPN1	0.785466	3.420296e-23	5.926346e-19	2.116552e-20
29	7949496	8132592	NM_002541	OGDH	0.784482	4.213614e-23	7.300930e-19	2.517562e-20
30	7949496	8133434	NM_022170	EIF4H	0.783934	4.729588e-23	8.194957e-19	2.731652e-20
31	7949496	8082478	NM_016128	COPG	0.783297	5.407890e-23	9.370252e-19	3.022662e-20
32	7949496	8006820	NM_006148	LASP1	0.781766	7.448633e-23	1.290625e-18	4.033202e-20
33	7949496	8172876	NM_006306	SMC1A	0.780345	1.000517e-22	1.733596e-18	5.253322e-20
34	7949496	7965480	NM_002629	PGAM1	0.778772	1.383181e-22	2.396638e-18	7.048936e-20
35	7949496	7995843	NM_014669	NUP93	0.777013	1.980603e-22	3.431791e-18	9.805118e-20
36	7949496	8064522	NM_174856	IDH3B	0.775303	2.799696e-22	4.851033e-18	1.347509e-19
37	7949496	8087874	NM_025222	WDR82	0.774389	3.364311e-22	5.829342e-18	1.575498e-19
38	7949496	7904974	NR_003242	C1orf152	0.770672	7.038610e-22	1.219580e-17	3.209421e-19
39	7949496	8062349	NM_002951	RPN2	0.769049	9.673114e-22	1.676060e-17	4.297591e-19
40	7949496	7995895	NM_014685	HERPUD1	0.768351	1.108275e-21	1.920308e-17	4.800770e-19
41	7949496	7950473	NM_004041	ARRB1	0.768100	1.163523e-21	2.016037e-17	4.917164e-19
42	7949496	7904881	NR_002305	PDIA3P	0.767124	1.405875e-21	2.435960e-17	5.799906e-19
43	7949496	8053909	NM_014014	SNRNP200	0.766635	1.544957e-21	2.676947e-17	6.225458e-19
44	7949496	7959282	NM_194271	RNF34	0.766297	1.648890e-21	2.857031e-17	6.493252e-19
45	7949496	8116096	NM_016222	DDX41	0.765849	1.797122e-21	3.113874e-17	6.919720e-19
46	7949496	8016099	NM_004247	EFTUD2	0.764674	2.250938e-21	3.900200e-17	8.478695e-19
47	7949496	8011542	NM_015113	ZZEF1	0.763881	2.617675e-21	4.535646e-17	9.650310e-19
48	7949496	7958152	NM_002629	PGAM1	0.763432	2.851100e-21	4.940100e-17	1.029188e-18
49	7949496	8018922	NM_004762	CYTH1	0.763358	2.891102e-21	5.009412e-17	1.022329e-18
50	7949496	7923659	NM_032833	PPP1R15B	0.763346	2.897844e-21	5.021094e-17	1.004219e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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