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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 15745.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
15745 7958152 NM_002629 PGAM1 link to infopage phosphoglycerate mutase 1 (brain)

Fetching correlation data, please wait...
Getting list of correlations for id 15745.
Getting list of p-values for id 15745.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.101 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7958152 7929624 NM_002629 PGAM1 link to infopage 0.997126 3.001501e-117 5.200700e-113 5.200700e-113
2 7958152 7965480 NM_002629 PGAM1 link to infopage 0.992582 4.326697e-96 7.496868e-92 3.748434e-92
3 7958152 8176282 NM_001029891 PGAM4 link to infopage 0.985874 9.345536e-82 1.619301e-77 5.397670e-78
4 7958152 8173729 NM_001029891 PGAM4 link to infopage 0.985874 9.345536e-82 1.619301e-77 4.048253e-78
5 7958152 8134552 NM_005720 ARPC1B link to infopage 0.835144 1.701612e-28 2.948384e-24 5.896768e-25
6 7958152 8116020 NM_006816 LMAN2 link to infopage 0.827666 1.366050e-27 2.366955e-23 3.944926e-24
7 7958152 8011759 NM_005022 PFN1 link to infopage 0.825426 2.501112e-27 4.333676e-23 6.190966e-24
8 7958152 7964466 NM_006400 DCTN2 link to infopage 0.823347 4.349289e-27 7.536013e-23 9.420017e-24
9 7958152 7978208 NM_012461 TINF2 link to infopage 0.821689 6.727341e-27 1.165646e-22 1.295163e-23
10 7958152 7904974 NR_003242 C1orf152 link to infopage 0.812694 6.646520e-26 1.151643e-21 1.151643e-22
11 7958152 7978201 NM_006156 NEDD8 link to infopage 0.809224 1.556089e-25 2.696236e-21 2.451124e-22
12 7958152 8110803 NM_030782 CLPTM1L link to infopage 0.798365 2.001093e-24 3.467294e-20 2.889412e-21
13 7958152 8030007 NM_001425 EMP3 link to infopage 0.798122 2.115112e-24 3.664854e-20 2.819119e-21
14 7958152 8019762 link to infopage 0.794606 4.673681e-24 8.098088e-20 5.784348e-21
15 7958152 7920271 NM_019554 S100A4 link to infopage 0.794213 5.101091e-24 8.838660e-20 5.892440e-21
16 7958152 7990211 NM_000520 HEXA link to infopage 0.794171 5.148954e-24 8.921592e-20 5.575995e-21
17 7958152 8025076 NM_005428 VAV1 link to infopage 0.793573 5.881365e-24 1.019064e-19 5.994494e-21
18 7958152 7989619 NM_000942 PPIB link to infopage 0.788126 1.935807e-23 3.354173e-19 1.863429e-20
19 7958152 7913256 NM_005216 DDOST link to infopage 0.786786 2.581114e-23 4.472296e-19 2.353840e-20
20 7958152 8028514 NM_013234 EIF3K link to infopage 0.786624 2.672318e-23 4.630326e-19 2.315163e-20
21 7958152 7940688 NM_002696 POLR2G link to infopage 0.784091 4.575795e-23 7.928479e-19 3.775466e-20
22 7958152 8064502 NM_003091 SNRPB link to infopage 0.783801 4.864528e-23 8.428767e-19 3.831258e-20
23 7958152 8099340 NM_017491 WDR1 link to infopage 0.782552 6.322385e-23 1.095480e-18 4.762955e-20
24 7958152 7973564 NM_176783 PSME1 link to infopage 0.782513 6.374376e-23 1.104488e-18 4.602034e-20
25 7958152 7926368 NM_003380 VIM link to infopage 0.780729 9.239504e-23 1.600929e-18 6.403716e-20
26 7958152 8073192 NM_006003 UQCRFS1 link to infopage 0.778979 1.325720e-22 2.297076e-18 8.834906e-20
27 7958152 8018364 NM_002086 GRB2 link to infopage 0.778309 1.520852e-22 2.635180e-18 9.759925e-20
28 7958152 7994756 NM_002720 PPP4C link to infopage 0.775812 2.526382e-22 4.377463e-18 1.563380e-19
29 7958152 8179019 NM_018950 HLA-F link to infopage 0.774126 3.545778e-22 6.143769e-18 2.118541e-19
30 7958152 8119648 NM_057161 KLHDC3 link to infopage 0.772534 4.871024e-22 8.440022e-18 2.813341e-19
31 7958152 8140828 NM_003130 SRI link to infopage 0.772181 5.224230e-22 9.052023e-18 2.920007e-19
32 7958152 7982531 NM_006305 ANP32A link to infopage 0.772003 5.411585e-22 9.376653e-18 2.930204e-19
33 7958152 8177717 NM_018950 HLA-F link to infopage 0.771337 6.173594e-22 1.069699e-17 3.241511e-19
34 7958152 8019250 NM_000918 P4HB link to infopage 0.770392 7.436728e-22 1.288562e-17 3.789888e-19
35 7958152 8019046 NM_014740 EIF4A3 link to infopage 0.770278 7.605078e-22 1.317732e-17 3.764948e-19
36 7958152 7963911 NM_001780 CD63 link to infopage 0.769971 8.076584e-22 1.399430e-17 3.887305e-19
37 7958152 8077550 NM_001077525 MTMR14 link to infopage 0.768404 1.096756e-21 1.900350e-17 5.136080e-19
38 7958152 8009932 NM_013260 SAP30BP link to infopage 0.767263 1.368668e-21 2.371490e-17 6.240764e-19
39 7958152 8006392 NM_002815 PSMD11 link to infopage 0.766341 1.635076e-21 2.833096e-17 7.264348e-19
40 7958152 7999233 NM_032569 GLYR1 link to infopage 0.765856 1.794937e-21 3.110087e-17 7.775218e-19
41 7958152 7969372 ENST00000362412 link to infopage -0.765249 2.016216e-21 3.493497e-17 8.520724e-19
42 7958152 8004030 NM_015528 RNF167 link to infopage 0.763433 2.850686e-21 4.939384e-17 1.176044e-18
43 7958152 7949496 NM_005507 CFL1 link to infopage 0.763432 2.851100e-21 4.940100e-17 1.148861e-18
44 7958152 8117760 NM_001098479 HLA-F link to infopage 0.762865 3.174461e-21 5.500389e-17 1.250088e-18
45 7958152 8139859 NM_000181 GUSB link to infopage 0.761710 3.947427e-21 6.839706e-17 1.519935e-18
46 7958152 8132580 NM_006555 YKT6 link to infopage 0.761329 4.240187e-21 7.346972e-17 1.597168e-18
47 7958152 8132539 NM_014063 DBNL link to infopage 0.760719 4.754674e-21 8.238424e-17 1.752856e-18
48 7958152 7897404 NM_007262 PARK7 link to infopage 0.758397 7.326372e-21 1.269441e-16 2.644668e-18
49 7958152 8139706 NM_014302 SEC61G link to infopage 0.757906 8.022461e-21 1.390052e-16 2.836840e-18
50 7958152 8138773 NM_022170 EIF4H link to infopage 0.756534 1.032643e-20 1.789261e-16 3.578521e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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