[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
14870	8173729	NM_001029891	PGAM4		phosphoglycerate mutase family member 4
14871	8176282	NM_001029891	PGAM4		phosphoglycerate mutase family member 4

Fetching correlation data, please wait...
Getting list of correlations for id 14870.
Getting list of p-values for id 14870.
1 of 2 done.
Getting list of correlations for id 14871.
Getting list of p-values for id 14871.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.227 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8176282	8173729	NM_001029891	PGAM4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8173729	8176282	NM_001029891	PGAM4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8173729	7958152	NM_002629	PGAM1	0.985874	9.345536e-82	3.238602e-77	1.079534e-77
4	8176282	7958152	NM_002629	PGAM1	0.985874	9.345536e-82	3.238602e-77	8.096505e-78
5	8176282	7929624	NM_002629	PGAM1	0.982532	4.828970e-77	1.673431e-72	3.346863e-73
6	8173729	7929624	NM_002629	PGAM1	0.982532	4.828970e-77	1.673431e-72	2.789052e-73
7	8176282	7965480	NM_002629	PGAM1	0.979280	2.936953e-73	1.017772e-68	1.453959e-69
8	8173729	7965480	NM_002629	PGAM1	0.979280	2.936953e-73	1.017772e-68	1.272214e-69
9	8176282	8011759	NM_005022	PFN1	0.826953	1.657574e-27	5.744157e-23	6.382397e-24
10	8173729	8011759	NM_005022	PFN1	0.826953	1.657574e-27	5.744157e-23	5.744157e-24
11	8173729	7904974	NR_003242	C1orf152	0.822269	5.778546e-27	2.002497e-22	1.820452e-23
12	8176282	7904974	NR_003242	C1orf152	0.822269	5.778546e-27	2.002497e-22	1.668748e-23
13	8176282	8116020	NM_006816	LMAN2	0.820052	1.030353e-26	3.570584e-22	2.746603e-23
14	8173729	8116020	NM_006816	LMAN2	0.820052	1.030353e-26	3.570584e-22	2.550417e-23
15	8176282	7964466	NM_006400	DCTN2	0.817077	2.211654e-26	7.664265e-22	5.109510e-23
16	8173729	7964466	NM_006400	DCTN2	0.817077	2.211654e-26	7.664265e-22	4.790165e-23
17	8176282	8019762			0.807635	2.284625e-25	7.917141e-21	4.657142e-22
18	8173729	8019762			0.807635	2.284625e-25	7.917141e-21	4.398412e-22
19	8173729	7978208	NM_012461	TINF2	0.806826	2.773801e-25	9.612328e-21	5.059120e-22
20	8176282	7978208	NM_012461	TINF2	0.806826	2.773801e-25	9.612328e-21	4.806164e-22
21	8173729	8134552	NM_005720	ARPC1B	0.804497	4.824312e-25	1.671817e-20	7.961034e-22
22	8176282	8134552	NM_005720	ARPC1B	0.804497	4.824312e-25	1.671817e-20	7.599169e-22
23	8173729	8025076	NM_005428	VAV1	0.793526	5.943701e-24	2.059730e-19	8.955349e-21
24	8176282	8025076	NM_005428	VAV1	0.793526	5.943701e-24	2.059730e-19	8.582210e-21
25	8176282	7978201	NM_006156	NEDD8	0.792753	7.052386e-24	2.443934e-19	9.775735e-21
26	8173729	7978201	NM_006156	NEDD8	0.792753	7.052386e-24	2.443934e-19	9.399745e-21
27	8173729	8018364	NM_002086	GRB2	0.786820	2.562402e-23	8.879747e-19	3.288795e-20
28	8176282	8018364	NM_002086	GRB2	0.786820	2.562402e-23	8.879747e-19	3.171338e-20
29	8173729	8064502	NM_003091	SNRPB	0.783291	5.415112e-23	1.876553e-18	6.470872e-20
30	8176282	8064502	NM_003091	SNRPB	0.783291	5.415112e-23	1.876553e-18	6.255176e-20
31	8173729	7920271	NM_019554	S100A4	0.782073	6.986800e-23	2.421206e-18	7.810341e-20
32	8176282	7920271	NM_019554	S100A4	0.782073	6.986800e-23	2.421206e-18	7.566268e-20
33	8176282	8099340	NM_017491	WDR1	0.781827	7.355649e-23	2.549027e-18	7.724323e-20
34	8173729	8099340	NM_017491	WDR1	0.781827	7.355649e-23	2.549027e-18	7.497137e-20
35	8173729	7973564	NM_176783	PSME1	0.781681	7.582711e-23	2.627713e-18	7.507750e-20
36	8176282	7973564	NM_176783	PSME1	0.781681	7.582711e-23	2.627713e-18	7.299201e-20
37	8176282	7990211	NM_000520	HEXA	0.780749	9.201443e-23	3.188668e-18	8.618021e-20
38	8173729	7990211	NM_000520	HEXA	0.780749	9.201443e-23	3.188668e-18	8.391231e-20
39	8173729	8110803	NM_030782	CLPTM1L	0.779888	1.099445e-22	3.810018e-18	9.769278e-20
40	8176282	8110803	NM_030782	CLPTM1L	0.779888	1.099445e-22	3.810018e-18	9.525046e-20
41	8173729	7926368	NM_003380	VIM	0.779711	1.140435e-22	3.952063e-18	9.639179e-20
42	8176282	7926368	NM_003380	VIM	0.779711	1.140435e-22	3.952063e-18	9.409675e-20
43	8173729	8030007	NM_001425	EMP3	0.779701	1.142591e-22	3.959536e-18	9.208222e-20
44	8176282	8030007	NM_001425	EMP3	0.779701	1.142591e-22	3.959536e-18	8.998945e-20
45	8173729	8019250	NM_000918	P4HB	0.777559	1.772615e-22	6.142819e-18	1.365071e-19
46	8176282	8019250	NM_000918	P4HB	0.777559	1.772615e-22	6.142819e-18	1.335395e-19
47	8176282	7989619	NM_000942	PPIB	0.777046	1.967530e-22	6.818277e-18	1.450697e-19
48	8173729	7989619	NM_000942	PPIB	0.777046	1.967530e-22	6.818277e-18	1.420474e-19
49	8176282	7994756	NM_002720	PPP4C	0.774899	3.036672e-22	1.052328e-17	2.147609e-19
50	8173729	7994756	NM_002720	PPP4C	0.774899	3.036672e-22	1.052328e-17	2.104656e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation