[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16838	7920271	NM_019554	S100A4		S100 calcium binding protein A4

Fetching correlation data, please wait...
Getting list of correlations for id 16838.
Getting list of p-values for id 16838.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.130 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7920271	8169659	NM_004541	NDUFA1	0.868244	3.994115e-33	6.920603e-29	6.920603e-29
2	7920271	8001782	NM_002954	RPS27A	0.835760	1.426624e-28	2.471911e-24	1.235955e-24
3	7920271	7940688	NM_002696	POLR2G	0.831289	5.043054e-28	8.738100e-24	2.912700e-24
4	7920271	7905571	NM_002965	S100A9	0.826310	1.971998e-27	3.416880e-23	8.542201e-24
5	7920271	8064502	NM_003091	SNRPB	0.822358	5.645866e-27	9.782593e-23	1.956519e-23
6	7920271	8042052	NM_002954	RPS27A	0.822124	6.003692e-27	1.040260e-22	1.733766e-23
7	7920271	7897404	NM_007262	PARK7	0.822035	6.145605e-27	1.064849e-22	1.521213e-23
8	7920271	7930304	NM_004832	GSTO1	0.816089	2.841113e-26	4.922796e-22	6.153495e-23
9	7920271	8109750	NM_001002	RPLP0	0.815557	3.249705e-26	5.630764e-22	6.256405e-23
10	7920271	7963911	NM_001780	CD63	0.811472	8.984894e-26	1.556813e-21	1.556813e-22
11	7920271	8028514	NM_013234	EIF3K	0.807548	2.332619e-25	4.041728e-21	3.674299e-22
12	7920271	7908407	NM_002954	RPS27A	0.806333	3.120217e-25	5.406400e-21	4.505334e-22
13	7920271	8043100	NM_021103	TMSB10	0.804333	5.014803e-25	8.689149e-21	6.683961e-22
14	7920271	8115158	NM_001025071	RPS14	0.802089	8.485380e-25	1.470262e-20	1.050187e-21
15	7920271	8165309	NM_003792	EDF1	0.801870	8.928709e-25	1.547077e-20	1.031385e-21
16	7920271	8029129	NM_001022	RPS19	0.800665	1.180464e-24	2.045389e-20	1.278368e-21
17	7920271	8139706	NM_014302	SEC61G	0.797714	2.320588e-24	4.020883e-20	2.365225e-21
18	7920271	8002133	NM_002801	PSMB10	0.797024	2.713707e-24	4.702040e-20	2.612244e-21
19	7920271	8122136	NM_001016	RPS12	0.796828	2.837115e-24	4.915870e-20	2.587300e-21
20	7920271	8000323	NM_005003	NDUFAB1	0.795534	3.796680e-24	6.578507e-20	3.289254e-21
21	7920271	7929624	NM_002629	PGAM1	0.794910	4.366737e-24	7.566245e-20	3.602974e-21
22	7920271	7958152	NM_002629	PGAM1	0.794213	5.101091e-24	8.838660e-20	4.017573e-21
23	7920271	8089249	NM_000986	RPL24	0.793220	6.360091e-24	1.102013e-19	4.791361e-21
24	7920271	7959078	GENSCAN00000059320		0.793151	6.458629e-24	1.119087e-19	4.662861e-21
25	7920271	7965480	NM_002629	PGAM1	0.788167	1.918687e-23	3.324509e-19	1.329803e-20
26	7920271	8134552	NM_005720	ARPC1B	0.783090	5.648150e-23	9.786550e-19	3.764058e-20
27	7920271	8176282	NM_001029891	PGAM4	0.782073	6.986800e-23	1.210603e-18	4.483714e-20
28	7920271	8173729	NM_001029891	PGAM4	0.782073	6.986800e-23	1.210603e-18	4.323582e-20
29	7920271	8116020	NM_006816	LMAN2	0.778981	1.325008e-22	2.295841e-18	7.916691e-20
30	7920271	8009227	NM_002805	PSMC5	0.778580	1.438607e-22	2.492675e-18	8.308917e-20
31	7920271	8178253	NM_022551	RPS18	0.777317	1.862014e-22	3.226312e-18	1.040746e-19
32	7920271	8118644	NM_022551	RPS18	0.777317	1.862014e-22	3.226312e-18	1.008223e-19
33	7920271	8179544	NM_022551	RPS18	0.777317	1.862014e-22	3.226312e-18	9.776703e-20
34	7920271	8179827	NM_001288	CLIC1	0.774555	3.253916e-22	5.638060e-18	1.658253e-19
35	7920271	8134589	NM_003910	BUD31	0.774546	3.259726e-22	5.648127e-18	1.613750e-19
36	7920271	7939068	NM_001028	RPS25	0.773186	4.278541e-22	7.413428e-18	2.059286e-19
37	7920271	7942586	NM_001005	RPS3	0.773097	4.354717e-22	7.545419e-18	2.039302e-19
38	7920271	7918050	NM_002295	RPSA	0.772906	4.523579e-22	7.838006e-18	2.062633e-19
39	7920271	7956211	NM_021019	MYL6	0.772282	5.120740e-22	8.872706e-18	2.275053e-19
40	7920271	8078905	NM_002295	RPSA	0.771459	6.027174e-22	1.044328e-17	2.610821e-19
41	7920271	8114618	NM_002488	NDUFA2	0.771308	6.208807e-22	1.075800e-17	2.623903e-19
42	7920271	8178598	NM_001288	CLIC1	0.770926	6.694977e-22	1.160039e-17	2.761997e-19
43	7920271	7978201	NM_006156	NEDD8	0.770825	6.829002e-22	1.183261e-17	2.751770e-19
44	7920271	8010050	NM_182565	FAM100B	0.768902	9.955299e-22	1.724955e-17	3.920352e-19
45	7920271	8172154	NM_002952	RPS2	0.767722	1.252242e-21	2.169760e-17	4.821689e-19
46	7920271	8164100	NM_007209	RPL35	0.764512	2.321532e-21	4.022519e-17	8.744606e-19
47	7920271	8074969	NM_001355	DDT	0.763980	2.569053e-21	4.451398e-17	9.471060e-19
48	7920271	8067382	NM_002792	PSMA7	0.763548	2.789129e-21	4.832724e-17	1.006817e-18
49	7920271	8063903	NM_001024	RPS21	0.761000	4.510868e-21	7.815981e-17	1.595098e-18
50	7920271	8125059	NM_001288	CLIC1	0.760677	4.792109e-21	8.303288e-17	1.660658e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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