[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
8178	8134589	NM_003910	BUD31		BUD31 homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 8178.
Getting list of p-values for id 8178.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.141 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8134589	7905571	NM_002965	S100A9	0.783335	5.364681e-23	9.295384e-19	9.295384e-19
2	8134589	7920271	NM_019554	S100A4	0.774546	3.259726e-22	5.648127e-18	2.824063e-18
3	8134589	8169659	NM_004541	NDUFA1	0.755742	1.193838e-20	2.068563e-16	6.895211e-17
4	8134589	7963911	NM_001780	CD63	0.746447	6.292462e-20	1.090295e-15	2.725737e-16
5	8134589	7940688	NM_002696	POLR2G	0.744399	8.987300e-20	1.557229e-15	3.114459e-16
6	8134589	8179827	NM_001288	CLIC1	0.739153	2.206304e-19	3.822864e-15	6.371439e-16
7	8134589	8160587	NM_002493	NDUFB6	0.736591	3.393849e-19	5.880522e-15	8.400746e-16
8	8134589	8002133	NM_002801	PSMB10	0.734584	4.740211e-19	8.213363e-15	1.026670e-15
9	8134589	8178598	NM_001288	CLIC1	0.732572	6.604468e-19	1.144356e-14	1.271507e-15
10	8134589	8018305	NM_016185	HN1	0.732541	6.638435e-19	1.150242e-14	1.150242e-15
11	8134589	7980955	NM_004545	NDUFB1	0.732416	6.776797e-19	1.174216e-14	1.067469e-15
12	8134589	8028514	NM_013234	EIF3K	0.732373	6.824455e-19	1.182473e-14	9.853944e-16
13	8134589	7956211	NM_021019	MYL6	0.732343	6.858261e-19	1.188331e-14	9.141006e-16
14	8134589	7930304	NM_004832	GSTO1	0.726719	1.705309e-18	2.954790e-14	2.110564e-15
15	8134589	8125059	NM_001288	CLIC1	0.726353	1.808003e-18	3.132727e-14	2.088485e-15
16	8134589	8036710	NM_004877	GMFG	0.722164	3.507901e-18	6.078140e-14	3.798838e-15
17	8134589	8115158	NM_001025071	RPS14	0.715248	1.020984e-17	1.769059e-13	1.040623e-14
18	8134589	7978201	NM_006156	NEDD8	0.713292	1.373287e-17	2.379494e-13	1.321941e-14
19	8134589	7997702	NM_001861	COX4I1	0.712894	1.458271e-17	2.526746e-13	1.329866e-14
20	8134589	8067382	NM_002792	PSMA7	0.711212	1.877226e-17	3.252669e-13	1.626334e-14
21	8134589	7983512	NM_021199	SQRDL	0.710593	2.059050e-17	3.567717e-13	1.698913e-14
22	8134589	8039796	NM_014453	CHMP2A	0.706668	3.680132e-17	6.376564e-13	2.898438e-14
23	8134589	8000323	NM_005003	NDUFAB1	0.704073	5.375224e-17	9.313651e-13	4.049413e-14
24	8134589	7994756	NM_002720	PPP4C	0.702356	6.890113e-17	1.193850e-12	4.974374e-14
25	8134589	8001782	NM_002954	RPS27A	0.700968	8.412363e-17	1.457610e-12	5.830441e-14
26	8134589	8063903	NM_001024	RPS21	0.699965	9.710204e-17	1.682487e-12	6.471104e-14
27	8134589	8043718	NM_001862	COX5B	0.699180	1.085918e-16	1.881570e-12	6.968777e-14
28	8134589	8101945	NM_002106	H2AFZ	0.697486	1.380714e-16	2.392363e-12	8.544153e-14
29	8134589	8074969	NM_001355	DDT	0.696675	1.547988e-16	2.682198e-12	9.248960e-14
30	8134589	8043100	NM_021103	TMSB10	0.696296	1.632756e-16	2.829076e-12	9.430252e-14
31	8134589	8165309	NM_003792	EDF1	0.696286	1.635109e-16	2.833154e-12	9.139205e-14
32	8134589	8038792	NM_001985	ETFB	0.695385	1.855473e-16	3.214978e-12	1.004681e-13
33	8134589	8010050	NM_182565	FAM100B	0.694682	2.047016e-16	3.546865e-12	1.074808e-13
34	8134589	8122136	NM_001016	RPS12	0.693136	2.538711e-16	4.398825e-12	1.293772e-13
35	8134589	8139706	NM_014302	SEC61G	0.692096	2.932131e-16	5.080504e-12	1.451573e-13
36	8134589	8140151	NM_181471	RFC2	0.691296	3.274342e-16	5.673452e-12	1.575959e-13
37	8134589	8042052	NM_002954	RPS27A	0.689035	4.464683e-16	7.735956e-12	2.090799e-13
38	8134589	8049180	NM_004846	EIF4E2	0.688478	4.816827e-16	8.346116e-12	2.196346e-13
39	8134589	8064502	NM_003091	SNRPB	0.687059	5.840894e-16	1.012052e-11	2.595004e-13
40	8134589	7939068	NM_001028	RPS25	0.686705	6.127996e-16	1.061798e-11	2.654495e-13
41	8134589	7916372	NM_004872	TMEM59	0.685592	7.121153e-16	1.233882e-11	3.009469e-13
42	8134589	7973564	NM_176783	PSME1	0.682641	1.057019e-15	1.831497e-11	4.360708e-13
43	8134589	7897404	NM_007262	PARK7	0.682324	1.102577e-15	1.910435e-11	4.442871e-13
44	8134589	8077781	NM_000551	VHL	0.681469	1.235026e-15	2.139930e-11	4.863478e-13
45	8134589	7920258	NM_014624	S100A6	0.680958	1.321450e-15	2.289676e-11	5.088168e-13
46	8134589	8019046	NM_014740	EIF4A3	0.679773	1.544841e-15	2.676746e-11	5.819013e-13
47	8134589	7955768	NM_002624	PFDN5	0.679732	1.553185e-15	2.691204e-11	5.725966e-13
48	8134589	7942586	NM_001005	RPS3	0.679112	1.685144e-15	2.919848e-11	6.083017e-13
49	8134589	7960553	NM_016497	MRPL51	0.678826	1.749470e-15	3.031306e-11	6.186339e-13
50	8134589	8050695	NM_016047	SF3B14	0.678726	1.772644e-15	3.071460e-11	6.142919e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation