[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13798	8049180	NM_004846	EIF4E2		eukaryotic translation initiation factor 4E family member 2

Fetching correlation data, please wait...
Getting list of correlations for id 13798.
Getting list of p-values for id 13798.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.172 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8049180	8080923	NM_002802	PSMC1	0.855913	2.886481e-31	5.001406e-27	5.001406e-27
2	8049180	7976189	NM_002802	PSMC1	0.852551	8.656944e-31	1.499989e-26	7.499944e-27
3	8049180	7940688	NM_002696	POLR2G	0.852327	9.305074e-31	1.612290e-26	5.374301e-27
4	8049180	8139706	NM_014302	SEC61G	0.845728	7.413070e-30	1.284463e-25	3.211157e-26
5	8049180	7963911	NM_001780	CD63	0.844637	1.034939e-29	1.793238e-25	3.586477e-26
6	8049180	8019046	NM_014740	EIF4A3	0.836761	1.069575e-28	1.853252e-24	3.088753e-25
7	8049180	8064502	NM_003091	SNRPB	0.824252	3.421193e-27	5.927901e-23	8.468430e-24
8	8049180	8116020	NM_006816	LMAN2	0.814963	3.773411e-26	6.538190e-22	8.172737e-23
9	8049180	8009227	NM_002805	PSMC5	0.813542	5.383200e-26	9.327471e-22	1.036386e-22
10	8049180	7975645	NM_021188	ZNF410	0.810308	1.195114e-25	2.070774e-21	2.070774e-22
11	8049180	8028514	NM_013234	EIF3K	0.808018	2.083244e-25	3.609637e-21	3.281488e-22
12	8049180	7941709	NM_002896	RBM4	0.807170	2.554255e-25	4.425757e-21	3.688131e-22
13	8049180	8039796	NM_014453	CHMP2A	0.807129	2.579358e-25	4.469254e-21	3.437888e-22
14	8049180	7930304	NM_004832	GSTO1	0.806541	2.968943e-25	5.144288e-21	3.674492e-22
15	8049180	7978201	NM_006156	NEDD8	0.805617	3.700439e-25	6.411750e-21	4.274500e-22
16	8049180	7935647	NM_078470	COX15	0.804174	5.206328e-25	9.021004e-21	5.638128e-22
17	8049180	7959597	NM_006815	TMED2	0.802940	6.955937e-25	1.205255e-20	7.089736e-22
18	8049180	8001185	NM_005880	DNAJA2	0.802446	7.808420e-25	1.352965e-20	7.516471e-22
19	8049180	8006392	NM_002815	PSMD11	0.802180	8.308146e-25	1.439552e-20	7.576592e-22
20	8049180	7977657	NM_031314	HNRNPC	0.800142	1.331899e-24	2.307782e-20	1.153891e-21
21	8049180	8164067	NM_002799	PSMB7	0.799992	1.378787e-24	2.389024e-20	1.137630e-21
22	8049180	8130952	NM_002793	PSMB1	0.799491	1.546851e-24	2.680229e-20	1.218286e-21
23	8049180	7980463	NM_012245	SNW1	0.798746	1.834535e-24	3.178699e-20	1.382043e-21
24	8049180	8030007	NM_001425	EMP3	0.798440	1.967211e-24	3.408586e-20	1.420244e-21
25	8049180	8147228	NM_001359	DECR1	0.795919	3.482327e-24	6.033827e-20	2.413531e-21
26	8049180	7906662	NM_016406	UFC1	0.794821	4.453575e-24	7.716710e-20	2.967965e-21
27	8049180	8134552	NM_005720	ARPC1B	0.792912	6.808748e-24	1.179752e-19	4.369451e-21
28	8049180	7928752	NM_014394	GHITM	0.792361	7.690142e-24	1.332471e-19	4.758825e-21
29	8049180	8094704	NM_005339	UBE2K	0.792338	7.729006e-24	1.339205e-19	4.617948e-21
30	8049180	7955890	NM_031157	HNRNPA1	0.791610	9.072578e-24	1.572006e-19	5.240018e-21
31	8049180	7959282	NM_194271	RNF34	0.790721	1.102300e-23	1.909955e-19	6.161144e-21
32	8049180	8091048	NR_023350	COPB2	0.790471	1.164206e-23	2.017219e-19	6.303810e-21
33	8049180	8074969	NM_001355	DDT	0.789746	1.363410e-23	2.362380e-19	7.158729e-21
34	8049180	7950644	NM_004549	NDUFC2	0.788913	1.633346e-23	2.830098e-19	8.323817e-21
35	8049180	7990566	NM_000126	ETFA	0.787048	2.440658e-23	4.228929e-19	1.208265e-20
36	8049180	8168500	NM_000291	PGK1	0.786583	2.695783e-23	4.670983e-19	1.297495e-20
37	8049180	7958819	NM_006817	ERP29	0.785367	3.493132e-23	6.052549e-19	1.635824e-20
38	8049180	8139421	NM_012412	H2AFV	0.785277	3.560740e-23	6.169694e-19	1.623604e-20
39	8049180	7973564	NM_176783	PSME1	0.782266	6.712035e-23	1.162994e-18	2.982037e-20
40	8049180	7983512	NM_021199	SQRDL	0.782006	7.086131e-23	1.227814e-18	3.069535e-20
41	8049180	7897404	NM_007262	PARK7	0.781745	7.481222e-23	1.296271e-18	3.161637e-20
42	8049180	8134699	NM_006833	COPS6	0.781599	7.713603e-23	1.336536e-18	3.182228e-20
43	8049180	8101324	NM_031370	HNRNPD	0.781560	7.775091e-23	1.347190e-18	3.133000e-20
44	8049180	7918345	NM_002790	PSMA5	0.781270	8.258806e-23	1.431003e-18	3.252280e-20
45	8049180	7970546	NM_152726	EFHA1	0.779997	1.075108e-22	1.862840e-18	4.139644e-20
46	8049180	7968297	NM_015932	POMP	0.779413	1.212593e-22	2.101060e-18	4.567522e-20
47	8049180	8146216	NM_001135694	VDAC3	0.779387	1.219025e-22	2.112205e-18	4.494053e-20
48	8049180	7978208	NM_012461	TINF2	0.779149	1.280181e-22	2.218170e-18	4.621188e-20
49	8049180	7999233	NM_032569	GLYR1	0.777474	1.803381e-22	3.124718e-18	6.376976e-20
50	8049180	7899361	NM_177424	STX12	0.776931	2.014012e-22	3.489679e-18	6.979358e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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