Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16831	7963911	NM_001780	CD63		CD63 molecule

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7963911	8039796	NM_014453	CHMP2A		0.895178	6.219097e-38	1.077583e-33	1.077583e-33
2	7963911	7994756	NM_002720	PPP4C		0.867901	4.525718e-33	7.841712e-29	3.920856e-29
3	7963911	8169659	NM_004541	NDUFA1		0.858515	1.210216e-31	2.096941e-27	6.989803e-28
4	7963911	8134552	NM_005720	ARPC1B		0.854193	5.081130e-31	8.804074e-27	2.201018e-27
5	7963911	8049180	NM_004846	EIF4E2		0.844637	1.034939e-29	1.793238e-25	3.586477e-26
6	7963911	8116020	NM_006816	LMAN2		0.844031	1.244308e-29	2.156012e-25	3.593354e-26
7	7963911	7978201	NM_006156	NEDD8		0.842661	1.882293e-29	3.261449e-25	4.659213e-26
8	7963911	7983512	NM_021199	SQRDL		0.842073	2.245064e-29	3.890022e-25	4.862527e-26
9	7963911	7973564	NM_176783	PSME1		0.831299	5.030235e-28	8.715888e-24	9.684320e-25
10	7963911	7940688	NM_002696	POLR2G		0.823371	4.322081e-27	7.488869e-23	7.488869e-24
11	7963911	8002133	NM_002801	PSMB10		0.823116	4.623195e-27	8.010610e-23	7.282372e-24
12	7963911	8019046	NM_014740	EIF4A3		0.822192	5.897537e-27	1.021866e-22	8.515551e-24
13	7963911	8030374	NM_004107	FCGRT		0.818952	1.368754e-26	2.371641e-22	1.824339e-23
14	7963911	7900922	NM_004047	ATP6V0B		0.816151	2.797530e-26	4.847280e-22	3.462343e-23
15	7963911	7930304	NM_004832	GSTO1		0.813874	4.956112e-26	8.587456e-22	5.724971e-23
16	7963911	8064502	NM_003091	SNRPB		0.813872	4.959115e-26	8.592658e-22	5.370411e-23
17	7963911	7905571	NM_002965	S100A9		0.813558	5.362699e-26	9.291948e-22	5.465852e-23
18	7963911	7920271	NM_019554	S100A4		0.811472	8.984894e-26	1.556813e-21	8.648958e-23
19	7963911	8028514	NM_013234	EIF3K		0.809695	1.387893e-25	2.404802e-21	1.265685e-22
20	7963911	8132646	NM_031443	CCM2		0.809409	1.487787e-25	2.577888e-21	1.288944e-22
21	7963911	8036808	NM_018457	PRR13		0.809064	1.617640e-25	2.802885e-21	1.334707e-22
22	7963911	8018305	NM_016185	HN1		0.806105	3.294880e-25	5.709039e-21	2.595018e-22
23	7963911	8089911	NM_005335	HCLS1		0.803075	6.740628e-25	1.167949e-20	5.078037e-22
24	7963911	8030007	NM_001425	EMP3		0.802470	7.764381e-25	1.345334e-20	5.605559e-22
25	7963911	8063509	NM_016407	C20orf43		0.802267	8.140728e-25	1.410544e-20	5.642176e-22
26	7963911	8140151	NM_181471	RFC2		0.802197	8.274860e-25	1.433785e-20	5.514557e-22
27	7963911	7955810	NM_018457	PRR13		0.800025	1.368225e-24	2.370723e-20	8.780455e-22
28	7963911	8018364	NM_002086	GRB2		0.799349	1.598021e-24	2.768892e-20	9.888899e-22
29	7963911	7977657	NM_031314	HNRNPC		0.796776	2.870190e-24	4.973177e-20	1.714889e-21
30	7963911	8080923	NM_002802	PSMC1		0.793109	6.518892e-24	1.129528e-19	3.765095e-21
31	7963911	7967060	NM_003769	SRSF9		0.792808	6.967365e-24	1.207235e-19	3.894307e-21
32	7963911	8036710	NM_004877	GMFG		0.792116	8.117404e-24	1.406503e-19	4.395321e-21
33	7963911	8074969	NM_001355	DDT		0.790548	1.144775e-23	1.983551e-19	6.010762e-21
34	7963911	7990020	NM_006305	ANP32A		0.788031	1.975851e-23	3.423556e-19	1.006928e-20
35	7963911	7976189	NM_002802	PSMC1		0.787616	2.160356e-23	3.743249e-19	1.069500e-20
36	7963911	8134740	NM_001008395	C7orf59		0.787122	2.402170e-23	4.162240e-19	1.156178e-20
37	7963911	8009227	NM_002805	PSMC5		0.785847	3.154406e-23	5.465639e-19	1.477200e-20
38	7963911	8179827	NM_001288	CLIC1		0.785531	3.373700e-23	5.845610e-19	1.538318e-20
39	7963911	8178598	NM_001288	CLIC1		0.783372	5.323112e-23	9.223356e-19	2.364963e-20
40	7963911	8048234	NM_152862	ARPC2		0.779164	1.276206e-22	2.211282e-18	5.528204e-20
41	7963911	7979473	NM_016029	DHRS7		0.777696	1.723728e-22	2.986703e-18	7.284642e-20
42	7963911	8125059	NM_001288	CLIC1		0.775403	2.743685e-22	4.753983e-18	1.131901e-19
43	7963911	8073960	NM_001001852	PIM3		0.774471	3.309137e-22	5.733742e-18	1.333428e-19
44	7963911	7900382	NM_006367	CAP1		0.774171	3.514083e-22	6.088852e-18	1.383830e-19
45	7963911	7897404	NM_007262	PARK7		0.773531	3.993655e-22	6.919806e-18	1.537735e-19
46	7963911	7916372	NM_004872	TMEM59		0.771807	5.626629e-22	9.749260e-18	2.119404e-19
47	7963911	7938880	NM_001098520	HTATIP2		0.771599	5.861967e-22	1.015703e-17	2.161070e-19
48	7963911	7998637	NM_016332	SEPX1		0.770649	7.070850e-22	1.225166e-17	2.552430e-19
49	7963911	7958152	NM_002629	PGAM1		0.769971	8.076584e-22	1.399430e-17	2.855979e-19
50	7963911	8139706	NM_014302	SEC61G		0.769533	8.800093e-22	1.524792e-17	3.049584e-19

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.