[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16598	8134552	NM_005720	ARPC1B		actin related protein 2/3 complex, subunit 1B, 41kDa

Fetching correlation data, please wait...
Getting list of correlations for id 16598.
Getting list of p-values for id 16598.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.118 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8134552	8116020	NM_006816	LMAN2	0.897365	2.223250e-38	3.852226e-34	3.852226e-34
2	8134552	7994756	NM_002720	PPP4C	0.883542	1.037606e-35	1.797860e-31	8.989300e-32
3	8134552	7978208	NM_012461	TINF2	0.857160	1.907642e-31	3.305372e-27	1.101791e-27
4	8134552	7963911	NM_001780	CD63	0.854193	5.081130e-31	8.804074e-27	2.201018e-27
5	8134552	8030007	NM_001425	EMP3	0.852990	7.514220e-31	1.301989e-26	2.603978e-27
6	8134552	8138773	NM_022170	EIF4H	0.844109	1.215507e-29	2.106108e-25	3.510181e-26
7	8134552	7900922	NM_004047	ATP6V0B	0.843120	1.639453e-29	2.840680e-25	4.058115e-26
8	8134552	8133434	NM_022170	EIF4H	0.841592	2.591845e-29	4.490890e-25	5.613612e-26
9	8134552	7958152	NM_002629	PGAM1	0.835144	1.701612e-28	2.948384e-24	3.275982e-25
10	8134552	7978201	NM_006156	NEDD8	0.833678	2.580864e-28	4.471863e-24	4.471863e-25
11	8134552	7940688	NM_002696	POLR2G	0.831655	4.554625e-28	7.891799e-24	7.174363e-25
12	8134552	7929624	NM_002629	PGAM1	0.829375	8.564423e-28	1.483958e-23	1.236631e-24
13	8134552	7965480	NM_002629	PGAM1	0.826546	1.850616e-27	3.206562e-23	2.466586e-24
14	8134552	8132539	NM_014063	DBNL	0.826064	2.107360e-27	3.651423e-23	2.608159e-24
15	8134552	8169659	NM_004541	NDUFA1	0.825594	2.390498e-27	4.142015e-23	2.761343e-24
16	8134552	8179019	NM_018950	HLA-F	0.823308	4.394512e-27	7.614371e-23	4.758982e-24
17	8134552	8177717	NM_018950	HLA-F	0.815401	3.379783e-26	5.856150e-22	3.444794e-23
18	8134552	8028514	NM_013234	EIF3K	0.812887	6.335236e-26	1.097706e-21	6.098368e-23
19	8134552	8003322	NM_000101	CYBA	0.807665	2.268185e-25	3.930085e-21	2.068466e-22
20	8134552	8117760	NM_001098479	HLA-F	0.806405	3.067112e-25	5.314386e-21	2.657193e-22
21	8134552	7989619	NM_000942	PPIB	0.806025	3.357894e-25	5.818223e-21	2.770582e-22
22	8134552	8173729	NM_001029891	PGAM4	0.804497	4.824312e-25	8.359085e-21	3.799584e-22
23	8134552	8176282	NM_001029891	PGAM4	0.804497	4.824312e-25	8.359085e-21	3.634385e-22
24	8134552	8077550	NM_001077525	MTMR14	0.804399	4.937398e-25	8.555029e-21	3.564595e-22
25	8134552	8039796	NM_014453	CHMP2A	0.802462	7.777972e-25	1.347689e-20	5.390757e-22
26	8134552	7973564	NM_176783	PSME1	0.800600	1.198524e-24	2.076682e-20	7.987237e-22
27	8134552	8006812	NM_002795	PSMB3	0.799543	1.528568e-24	2.648551e-20	9.809447e-22
28	8134552	7982531	NM_006305	ANP32A	0.798421	1.976033e-24	3.423872e-20	1.222811e-21
29	8134552	7964466	NM_006400	DCTN2	0.798105	2.123421e-24	3.679252e-20	1.268708e-21
30	8134552	8019046	NM_014740	EIF4A3	0.797903	2.222980e-24	3.851757e-20	1.283919e-21
31	8134552	8049180	NM_004846	EIF4E2	0.792912	6.808748e-24	1.179752e-19	3.805651e-21
32	8134552	8030374	NM_004107	FCGRT	0.792429	7.576548e-24	1.312789e-19	4.102464e-21
33	8134552	8016980	hsa-mir-142		0.790920	1.055438e-23	1.828758e-19	5.541691e-21
34	8134552	8099340	NM_017491	WDR1	0.788835	1.661287e-23	2.878512e-19	8.466212e-21
35	8134552	8119648	NM_057161	KLHDC3	0.787606	2.165002e-23	3.751299e-19	1.071800e-20
36	8134552	7983512	NM_021199	SQRDL	0.784007	4.657439e-23	8.069945e-19	2.241651e-20
37	8134552	7920271	NM_019554	S100A4	0.783090	5.648150e-23	9.786550e-19	2.645014e-20
38	8134552	7911619	NM_002074	GNB1	0.783088	5.650631e-23	9.790849e-19	2.576539e-20
39	8134552	7994769	NM_007074	CORO1A	0.782427	6.489515e-23	1.124438e-18	2.883175e-20
40	8134552	8064502	NM_003091	SNRPB	0.781851	7.317977e-23	1.267986e-18	3.169965e-20
41	8134552	7921752	NM_001025598	ARHGAP30	0.778580	1.438806e-22	2.493020e-18	6.080536e-20
42	8134552	8074969	NM_001355	DDT	0.777998	1.620437e-22	2.807731e-18	6.685075e-20
43	8134552	8025076	NM_005428	VAV1	0.775992	2.436250e-22	4.221290e-18	9.816953e-20
44	8134552	7913256	NM_005216	DDOST	0.774947	3.007650e-22	5.211355e-18	1.184399e-19
45	8134552	8009653	NM_007261	CD300A	0.774828	3.080515e-22	5.337607e-18	1.186135e-19
46	8134552	7897404	NM_007262	PARK7	0.774194	3.498120e-22	6.061193e-18	1.317651e-19
47	8134552	8177788	NM_005516	HLA-E	0.773175	4.287941e-22	7.429715e-18	1.580790e-19
48	8134552	8179103	NM_005516	HLA-E	0.773175	4.287941e-22	7.429715e-18	1.547857e-19
49	8134552	8165309	NM_003792	EDF1	0.772817	4.604946e-22	7.978991e-18	1.628365e-19
50	8134552	7977657	NM_031314	HNRNPC	0.770696	7.004653e-22	1.213696e-17	2.427393e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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