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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
16368 8009653 NM_007261 CD300A link to infopage CD300a molecule

Fetching correlation data, please wait...
Getting list of correlations for id 16368.
Getting list of p-values for id 16368.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.134 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8009653 8179103 NM_005516 HLA-E link to infopage 0.822092 6.053540e-27 1.048897e-22 1.048897e-22
2 8009653 8177788 NM_005516 HLA-E link to infopage 0.822092 6.053540e-27 1.048897e-22 5.244484e-23
3 8009653 8117890 NM_005516 HLA-E link to infopage 0.821654 6.789298e-27 1.176382e-22 3.921272e-23
4 8009653 8061668 NM_002110 HCK link to infopage 0.798567 1.911188e-24 3.311515e-20 8.278788e-21
5 8009653 7983512 NM_021199 SQRDL link to infopage 0.794399 4.893779e-24 8.479450e-20 1.695890e-20
6 8009653 8117800 NM_002116 HLA-A link to infopage 0.791551 9.191647e-24 1.592637e-19 2.654394e-20
7 8009653 7994756 NM_002720 PPP4C link to infopage 0.788919 1.631260e-23 2.826485e-19 4.037835e-20
8 8009653 7956593 NM_006812 OS9 link to infopage 0.788508 1.782875e-23 3.089187e-19 3.861484e-20
9 8009653 8179019 NM_018950 HLA-F link to infopage 0.783746 4.921218e-23 8.526995e-19 9.474439e-20
10 8009653 8117760 NM_001098479 HLA-F link to infopage 0.783351 5.346782e-23 9.264369e-19 9.264369e-20
11 8009653 8006812 NM_002795 PSMB3 link to infopage 0.782209 6.791633e-23 1.176786e-18 1.069806e-19
12 8009653 8089911 NM_005335 HCLS1 link to infopage 0.778592 1.435052e-22 2.486515e-18 2.072096e-19
13 8009653 8016980 hsa-mir-142 link to infopage 0.778095 1.588744e-22 2.752816e-18 2.117551e-19
14 8009653 8177717 NM_018950 HLA-F link to infopage 0.774926 3.020129e-22 5.232977e-18 3.737841e-19
15 8009653 8134552 NM_005720 ARPC1B link to infopage 0.774828 3.080515e-22 5.337607e-18 3.558405e-19
16 8009653 8093086 NM_005017 PCYT1A link to infopage 0.772068 5.343179e-22 9.258126e-18 5.786329e-19
17 8009653 7921738 NM_007122 USF1 link to infopage 0.771905 5.517571e-22 9.560296e-18 5.623703e-19
18 8009653 8036808 NM_018457 PRR13 link to infopage 0.770800 6.862547e-22 1.189074e-17 6.605964e-19
19 8009653 8177732 NM_002116 HLA-A link to infopage 0.765237 2.020881e-21 3.501581e-17 1.842938e-18
20 8009653 8087473 NM_153273 IP6K1 link to infopage 0.758460 7.240899e-21 1.254630e-16 6.273152e-18
21 8009653 7963911 NM_001780 CD63 link to infopage 0.758211 7.581890e-21 1.313714e-16 6.255781e-18
22 8009653 8116020 NM_006816 LMAN2 link to infopage 0.757023 9.440598e-21 1.635772e-16 7.435329e-18
23 8009653 8042391 NM_002664 PLEK link to infopage 0.756545 1.030696e-20 1.785886e-16 7.764723e-18
24 8009653 7973564 NM_176783 PSME1 link to infopage 0.755835 1.173878e-20 2.033979e-16 8.474913e-18
25 8009653 8117777 NM_002127 HLA-G link to infopage 0.755365 1.278931e-20 2.216003e-16 8.864012e-18
26 8009653 7994659 NM_017458 MVP link to infopage 0.754812 1.414698e-20 2.451246e-16 9.427871e-18
27 8009653 8179731 link to infopage 0.754047 1.625588e-20 2.816656e-16 1.043206e-17
28 8009653 7955810 NM_018457 PRR13 link to infopage 0.752969 1.975289e-20 3.422583e-16 1.222351e-17
29 8009653 7900922 NM_004047 ATP6V0B link to infopage 0.747964 4.820711e-20 8.352846e-16 2.880292e-17
30 8009653 8178498 NM_005514 HLA-B link to infopage 0.747547 5.188265e-20 8.989707e-16 2.996569e-17
31 8009653 7921752 NM_001025598 ARHGAP30 link to infopage 0.747192 5.522244e-20 9.568391e-16 3.086578e-17
32 8009653 7973660 NM_016576 GMPR2 link to infopage 0.746528 6.203310e-20 1.074848e-15 3.358899e-17
33 8009653 8132539 NM_014063 DBNL link to infopage 0.745477 7.452068e-20 1.291220e-15 3.912787e-17
34 8009653 7975361 NM_014734 KIAA0247 link to infopage 0.745208 7.809708e-20 1.353188e-15 3.979965e-17
35 8009653 8030374 NM_004107 FCGRT link to infopage 0.744906 8.230272e-20 1.426059e-15 4.074455e-17
36 8009653 8114010 NM_002198 IRF1 link to infopage 0.743785 9.994543e-20 1.731754e-15 4.810429e-17
37 8009653 8063509 NM_016407 C20orf43 link to infopage 0.743578 1.035810e-19 1.794748e-15 4.850670e-17
38 8009653 8178489 link to infopage 0.742216 1.309327e-19 2.268671e-15 5.970188e-17
39 8009653 7958828 NM_001143906 TRAFD1 link to infopage 0.741560 1.465104e-19 2.538585e-15 6.509193e-17
40 8009653 8124911 NM_005514 HLA-B link to infopage 0.741419 1.500701e-19 2.600264e-15 6.500660e-17
41 8009653 8103911 NM_002199 IRF2 link to infopage 0.741164 1.567651e-19 2.716269e-15 6.625047e-17
42 8009653 7963721 NM_020898 CALCOCO1 link to infopage 0.740622 1.719242e-19 2.978930e-15 7.092691e-17
43 8009653 8132646 NM_031443 CCM2 link to infopage 0.740477 1.762218e-19 3.053394e-15 7.100917e-17
44 8009653 7914887 NM_014408 TRAPPC3 link to infopage 0.738538 2.447740e-19 4.241199e-15 9.639089e-17
45 8009653 7911600 NM_023018 NADK link to infopage 0.738336 2.532187e-19 4.387520e-15 9.750045e-17
46 8009653 7914112 NM_005248 FGR link to infopage 0.736671 3.348932e-19 5.802695e-15 1.261455e-16
47 8009653 8018364 NM_002086 GRB2 link to infopage 0.735012 4.415090e-19 7.650026e-15 1.627665e-16
48 8009653 8007471 NM_031858 NBR1 link to infopage 0.734430 4.862388e-19 8.425059e-15 1.755221e-16
49 8009653 7962194 NM_001013699 H3F3C link to infopage 0.733754 5.437282e-19 9.421179e-15 1.922690e-16
50 8009653 8030007 NM_001425 EMP3 link to infopage 0.732889 6.270037e-19 1.086409e-14 2.172819e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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