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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
13372 7973660 NM_016576 GMPR2 link to infopage guanosine monophosphate reductase 2

Fetching correlation data, please wait...
Getting list of correlations for id 13372.
Getting list of p-values for id 13372.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.136 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7973660 8036710 NM_004877 GMFG link to infopage 0.859323 9.207481e-32 1.595380e-27 1.595380e-27
2 7973660 7900382 NM_006367 CAP1 link to infopage 0.834601 1.986195e-28 3.441479e-24 1.720740e-24
3 7973660 7983512 NM_021199 SQRDL link to infopage 0.826853 1.703258e-27 2.951236e-23 9.837452e-24
4 7973660 8168852 NM_019597 HNRNPH2 link to infopage 0.826579 1.834175e-27 3.178075e-23 7.945186e-24
5 7973660 8093086 NM_005017 PCYT1A link to infopage 0.826502 1.872367e-27 3.244250e-23 6.488500e-24
6 7973660 8089911 NM_005335 HCLS1 link to infopage 0.825006 2.798267e-27 4.848557e-23 8.080929e-24
7 7973660 8025076 NM_005428 VAV1 link to infopage 0.823030 4.729641e-27 8.195048e-23 1.170721e-23
8 7973660 8119000 NM_001315 MAPK14 link to infopage 0.820993 8.069867e-27 1.398266e-22 1.747832e-23
9 7973660 7914218 NM_001135218 TAF12 link to infopage 0.820493 9.190026e-27 1.592356e-22 1.769284e-23
10 7973660 8018305 NM_016185 HN1 link to infopage 0.820074 1.024578e-26 1.775286e-22 1.775286e-23
11 7973660 8018364 NM_002086 GRB2 link to infopage 0.817486 1.993018e-26 3.453302e-22 3.139365e-23
12 7973660 8036808 NM_018457 PRR13 link to infopage 0.816183 2.774565e-26 4.807489e-22 4.006241e-23
13 7973660 7965606 NM_002108 HAL link to infopage 0.812458 7.045417e-26 1.220759e-21 9.390457e-23
14 7973660 8102006 NM_005908 MANBA link to infopage 0.810408 1.166274e-25 2.020803e-21 1.443431e-22
15 7973660 8171802 NM_001037171 ACOT9 link to infopage 0.808780 1.733095e-25 3.002933e-21 2.001955e-22
16 7973660 7955810 NM_018457 PRR13 link to infopage 0.808747 1.747016e-25 3.027054e-21 1.891909e-22
17 7973660 7956593 NM_006812 OS9 link to infopage 0.808184 2.001457e-25 3.467925e-21 2.039956e-22
18 7973660 8061668 NM_002110 HCK link to infopage 0.803039 6.796482e-25 1.177626e-20 6.542369e-22
19 7973660 8174474 NM_022977 ACSL4 link to infopage 0.801265 1.027552e-24 1.780439e-20 9.370732e-22
20 7973660 8072744 NM_013416 NCF4 link to infopage 0.801029 1.085136e-24 1.880215e-20 9.401077e-22
21 7973660 7940191 NM_004177 STX3 link to infopage 0.800750 1.157499e-24 2.005598e-20 9.550467e-22
22 7973660 7971573 NM_001268 RCBTB2 link to infopage 0.800164 1.325120e-24 2.296035e-20 1.043652e-21
23 7973660 8103911 NM_002199 IRF2 link to infopage 0.799621 1.501503e-24 2.601654e-20 1.131154e-21
24 7973660 8176306 NM_001161531 CSF2RA link to infopage 0.794109 5.220278e-24 9.045175e-20 3.768823e-21
25 7973660 8165735 NM_001161531 CSF2RA link to infopage 0.794109 5.220278e-24 9.045175e-20 3.618070e-21
26 7973660 7921752 NM_001025598 ARHGAP30 link to infopage 0.794078 5.256646e-24 9.108190e-20 3.503150e-21
27 7973660 7958600 NM_033121 ANKRD13A link to infopage 0.793407 6.102736e-24 1.057421e-19 3.916374e-21
28 7973660 7951397 NM_033292 CASP1 link to infopage 0.792088 8.167760e-24 1.415228e-19 5.054385e-21
29 7973660 7974533 NM_021255 PELI2 link to infopage 0.791778 8.744366e-24 1.515136e-19 5.224608e-21
30 7973660 8016980 hsa-mir-142 link to infopage 0.791714 8.867952e-24 1.536550e-19 5.121833e-21
31 7973660 8016847 NM_005082 TRIM25 link to infopage 0.791553 9.187683e-24 1.591950e-19 5.135322e-21
32 7973660 8102860 NM_002107 H3F3A link to infopage 0.791263 9.790220e-24 1.696351e-19 5.301098e-21
33 7973660 8039796 NM_014453 CHMP2A link to infopage 0.790536 1.147842e-23 1.988866e-19 6.026866e-21
34 7973660 8030374 NM_004107 FCGRT link to infopage 0.789242 1.521088e-23 2.635588e-19 7.751731e-21
35 7973660 8117485 NM_078476 BTN2A1 link to infopage 0.786761 2.595421e-23 4.497087e-19 1.284882e-20
36 7973660 8084607 NM_021627 SENP2 link to infopage 0.786015 3.043423e-23 5.273339e-19 1.464817e-20
37 7973660 8119408 NM_002505 NFYA link to infopage 0.785440 3.439145e-23 5.959007e-19 1.610542e-20
38 7973660 8048234 NM_152862 ARPC2 link to infopage 0.784994 3.780751e-23 6.550907e-19 1.723923e-20
39 7973660 7917472 NM_001514 GTF2B link to infopage 0.784177 4.493090e-23 7.785177e-19 1.996199e-20
40 7973660 7938880 NM_001098520 HTATIP2 link to infopage 0.782785 6.021443e-23 1.043335e-18 2.608339e-20
41 7973660 7967841 NM_001161344 CHFR link to infopage 0.782688 6.144213e-23 1.064608e-18 2.596604e-20
42 7973660 7953723 NM_016184 CLEC4A link to infopage 0.782347 6.598744e-23 1.143364e-18 2.722296e-20
43 7973660 8009502 NM_000891 KCNJ2 link to infopage 0.781738 7.492083e-23 1.298153e-18 3.018961e-20
44 7973660 8127145 NM_021814 ELOVL5 link to infopage 0.781228 8.330988e-23 1.443510e-18 3.280705e-20
45 7973660 7919751 NM_021960 MCL1 link to infopage 0.780886 8.944221e-23 1.549765e-18 3.443923e-20
46 7973660 8168500 NM_000291 PGK1 link to infopage 0.780747 9.205417e-23 1.595023e-18 3.467441e-20
47 7973660 8157945 NM_001099270 ZBTB34 link to infopage 0.780513 9.662801e-23 1.674274e-18 3.562284e-20
48 7973660 8044919 NM_002881 RALB link to infopage 0.780098 1.052941e-22 1.824431e-18 3.800899e-20
49 7973660 8132646 NM_031443 CCM2 link to infopage 0.779771 1.126373e-22 1.951666e-18 3.982992e-20
50 7973660 8018439 NM_005324 H3F3B link to infopage 0.779698 1.143299e-22 1.980994e-18 3.961988e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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