[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
13768	8165735	NM_001161531	CSF2RA		colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)
13769	8176306	NM_001161531	CSF2RA		colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)

Fetching correlation data, please wait...
Getting list of correlations for id 13768.
Getting list of p-values for id 13768.
1 of 2 done.
Getting list of correlations for id 13769.
Getting list of p-values for id 13769.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.227 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8165735	8176306	NM_001161531	CSF2RA	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8176306	8165735	NM_001161531	CSF2RA	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8176306	7922773	NM_000433	NCF2	0.829316	8.703979e-28	3.016277e-23	1.005426e-23
4	8165735	7922773	NM_000433	NCF2	0.829316	8.703979e-28	3.016277e-23	7.540692e-24
5	8176306	7952022	NM_001098526	AMICA1	0.828253	1.164304e-27	4.034781e-23	8.069562e-24
6	8165735	7952022	NM_001098526	AMICA1	0.828253	1.164304e-27	4.034781e-23	6.724635e-24
7	8165735	8102006	NM_005908	MANBA	0.826845	1.706834e-27	5.914861e-23	8.449801e-24
8	8176306	8102006	NM_005908	MANBA	0.826845	1.706834e-27	5.914861e-23	7.393576e-24
9	8165735	7979085	NM_002863	PYGL	0.823602	4.065455e-27	1.408843e-22	1.565381e-23
10	8176306	7979085	NM_002863	PYGL	0.823602	4.065455e-27	1.408843e-22	1.408843e-23
11	8165735	7956593	NM_006812	OS9	0.820778	8.535029e-27	2.957729e-22	2.688845e-23
12	8176306	7956593	NM_006812	OS9	0.820778	8.535029e-27	2.957729e-22	2.464774e-23
13	8176306	8124088	NM_022113	KIF13A	0.815289	3.476891e-26	1.204882e-21	9.268323e-23
14	8165735	8124088	NM_022113	KIF13A	0.815289	3.476891e-26	1.204882e-21	8.606300e-23
15	8176306	7980005	NM_001005743	NUMB	0.813518	5.416733e-26	1.877115e-21	1.251410e-22
16	8165735	7980005	NM_001005743	NUMB	0.813518	5.416733e-26	1.877115e-21	1.173197e-22
17	8176306	7929511	NM_001776	ENTPD1	0.811206	9.592489e-26	3.324181e-21	1.955401e-22
18	8165735	7929511	NM_001776	ENTPD1	0.811206	9.592489e-26	3.324181e-21	1.846767e-22
19	8165735	7965606	NM_002108	HAL	0.810917	1.029689e-25	3.568283e-21	1.878044e-22
20	8176306	7965606	NM_002108	HAL	0.810917	1.029689e-25	3.568283e-21	1.784142e-22
21	8176306	8145365	NM_024940	DOCK5	0.809841	1.339591e-25	4.642218e-21	2.210580e-22
22	8165735	8145365	NM_024940	DOCK5	0.809841	1.339591e-25	4.642218e-21	2.110099e-22
23	8165735	8064790	NM_014737	RASSF2	0.809365	1.503907e-25	5.211639e-21	2.265930e-22
24	8176306	8064790	NM_014737	RASSF2	0.809365	1.503907e-25	5.211639e-21	2.171516e-22
25	8165735	8072279	NM_153050	MTMR3	0.806934	2.702539e-25	9.365378e-21	3.746151e-22
26	8176306	8072279	NM_153050	MTMR3	0.806934	2.702539e-25	9.365378e-21	3.602069e-22
27	8165735	7900382	NM_006367	CAP1	0.806711	2.851105e-25	9.880220e-21	3.659341e-22
28	8176306	7900382	NM_006367	CAP1	0.806711	2.851105e-25	9.880220e-21	3.528650e-22
29	8165735	8089911	NM_005335	HCLS1	0.806161	3.251385e-25	1.126735e-20	3.885293e-22
30	8176306	8089911	NM_005335	HCLS1	0.806161	3.251385e-25	1.126735e-20	3.755783e-22
31	8165735	8116372	NM_018434	RNF130	0.805807	3.536756e-25	1.225627e-20	3.953637e-22
32	8176306	8116372	NM_018434	RNF130	0.805807	3.536756e-25	1.225627e-20	3.830086e-22
33	8176306	8110055	NM_030627	CPEB4	0.801688	9.314831e-25	3.227961e-20	9.781701e-22
34	8165735	8110055	NM_030627	CPEB4	0.801688	9.314831e-25	3.227961e-20	9.494004e-22
35	8176306	8129693	ENST00000458970		0.800689	1.173905e-24	4.068051e-20	1.162300e-21
36	8165735	8129693	ENST00000458970		0.800689	1.173905e-24	4.068051e-20	1.130014e-21
37	8165735	7971573	NM_001268	RCBTB2	0.799810	1.437459e-24	4.981372e-20	1.346317e-21
38	8176306	7971573	NM_001268	RCBTB2	0.799810	1.437459e-24	4.981372e-20	1.310887e-21
39	8176306	8101511	NM_014991	WDFY3	0.799694	1.476382e-24	5.116254e-20	1.311860e-21
40	8165735	8101511	NM_014991	WDFY3	0.799694	1.476382e-24	5.116254e-20	1.279064e-21
41	8165735	8061668	NM_002110	HCK	0.795932	3.471585e-24	1.203043e-19	2.934251e-21
42	8176306	8061668	NM_002110	HCK	0.795932	3.471585e-24	1.203043e-19	2.864388e-21
43	8165735	7940191	NM_004177	STX3	0.795735	3.629322e-24	1.257705e-19	2.924896e-21
44	8176306	7940191	NM_004177	STX3	0.795735	3.629322e-24	1.257705e-19	2.858421e-21
45	8165735	8018364	NM_002086	GRB2	0.794159	5.162796e-24	1.789115e-19	3.975812e-21
46	8176306	8018364	NM_002086	GRB2	0.794159	5.162796e-24	1.789115e-19	3.889381e-21
47	8176306	7973660	NM_016576	GMPR2	0.794109	5.220278e-24	1.809035e-19	3.849011e-21
48	8165735	7973660	NM_016576	GMPR2	0.794109	5.220278e-24	1.809035e-19	3.768823e-21
49	8176306	8063873	NM_144498	OSBPL2	0.793440	6.057012e-24	2.098997e-19	4.283667e-21
50	8165735	8063873	NM_144498	OSBPL2	0.793440	6.057012e-24	2.098997e-19	4.197994e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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