[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 17207.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
17207	8102860	NM_002107	H3F3A		H3 histone, family 3A

Fetching correlation data, please wait...
Getting list of correlations for id 17207.
Getting list of p-values for id 17207.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.083 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8102860	8046515	NM_002107	H3F3A	0.984753	4.637278e-80	8.035011e-76	8.035011e-76
2	8102860	7910124	NM_002107	H3F3A	0.978469	2.077024e-72	3.598859e-68	1.799429e-68
3	8102860	8169740	NM_002107	H3F3A	0.976877	7.860693e-71	1.362022e-66	4.540074e-67
4	8102860	8130556	NM_001024465	SOD2	0.855144	3.720316e-31	6.446192e-27	1.611548e-27
5	8102860	7980005	NM_001005743	NUMB	0.849346	2.405658e-30	4.168283e-26	8.336566e-27
6	8102860	7950578	NM_001128620	PAK1	0.848369	3.269155e-30	5.664466e-26	9.440776e-27
7	8102860	8116372	NM_018434	RNF130	0.847684	4.048833e-30	7.015413e-26	1.002202e-26
8	8102860	8054329	NM_173647	RNF149	0.837431	8.813484e-29	1.527112e-24	1.908891e-25
9	8102860	7983910	NM_020980	AQP9	0.834413	2.095403e-28	3.630704e-24	4.034116e-25
10	8102860	8103951	NM_001995	ACSL1	0.829080	9.286511e-28	1.609074e-23	1.609074e-24
11	8102860	8152845	BC017297	FAM49B	0.829015	9.452893e-28	1.637903e-23	1.489003e-24
12	8102860	7974533	NM_021255	PELI2	0.828356	1.132041e-27	1.961488e-23	1.634573e-24
13	8102860	8001317	NM_153029	N4BP1	0.827879	1.289251e-27	2.233886e-23	1.718374e-24
14	8102860	7958600	NM_033121	ANKRD13A	0.827541	1.413334e-27	2.448884e-23	1.749203e-24
15	8102860	7919751	NM_021960	MCL1	0.825536	2.428087e-27	4.207147e-23	2.804764e-24
16	8102860	7955810	NM_018457	PRR13	0.824132	3.532068e-27	6.120014e-23	3.825009e-24
17	8102860	8174474	NM_022977	ACSL4	0.823602	4.065257e-27	7.043871e-23	4.143453e-24
18	8102860	8068280	NM_005534	IFNGR2	0.823530	4.143547e-27	7.179524e-23	3.988624e-24
19	8102860	7927964	NM_002727	SRGN	0.822271	5.775554e-27	1.000730e-22	5.267001e-24
20	8102860	7995697	NM_017839	LPCAT2	0.821274	7.497983e-27	1.299176e-22	6.495878e-24
21	8102860	8166511	NM_005391	PDK3	0.820280	9.713322e-27	1.683027e-22	8.014415e-24
22	8102860	8166065	NM_138636	TLR8	0.820075	1.024182e-26	1.774600e-22	8.066366e-24
23	8102860	8157941	NM_001099270	ZBTB34	0.819821	1.093884e-26	1.895372e-22	8.240749e-24
24	8102860	7940191	NM_004177	STX3	0.819617	1.153189e-26	1.998131e-22	8.325547e-24
25	8102860	7946478	NM_015213	DENND5A	0.819300	1.251372e-26	2.168252e-22	8.673008e-24
26	8102860	7965606	NM_002108	HAL	0.818972	1.361858e-26	2.359691e-22	9.075735e-24
27	8102860	8151756	NM_018710	TMEM55A	0.818882	1.393931e-26	2.415264e-22	8.945421e-24
28	8102860	7951372	NM_033306	CASP4	0.817801	1.839006e-26	3.186445e-22	1.138016e-23
29	8102860	8036808	NM_018457	PRR13	0.817579	1.945923e-26	3.371701e-22	1.162655e-23
30	8102860	7979085	NM_002863	PYGL	0.814815	3.916218e-26	6.785630e-22	2.261877e-23
31	8102860	8041508	NM_012413	QPCT	0.813470	5.480831e-26	9.496637e-22	3.063431e-23
32	8102860	8155883	NM_012383	OSTF1	0.812871	6.360163e-26	1.102025e-21	3.443829e-23
33	8102860	8085999	NM_017801	CMTM6	0.811605	8.696833e-26	1.506900e-21	4.566364e-23
34	8102860	7922773	NM_000433	NCF2	0.811603	8.700930e-26	1.507610e-21	4.434148e-23
35	8102860	8162276	NM_005384	NFIL3	0.810408	1.166458e-25	2.021122e-21	5.774633e-23
36	8102860	8046003	NM_012198	GCA	0.808574	1.821797e-25	3.156628e-21	8.768410e-23
37	8102860	8018364	NM_002086	GRB2	0.808255	1.967313e-25	3.408764e-21	9.212875e-23
38	8102860	8047381	NM_003879	CFLAR	0.808146	2.019696e-25	3.499528e-21	9.209283e-23
39	8102860	7963054	NM_006009	TUBA1A	0.807012	2.652591e-25	4.596144e-21	1.178498e-22
40	8102860	8096675	NM_001127208	TET2	0.806883	2.736072e-25	4.740792e-21	1.185198e-22
41	8102860	7956819	NM_178169	RASSF3	0.806357	3.102869e-25	5.376342e-21	1.311303e-22
42	8102860	7952022	NM_001098526	AMICA1	0.803988	5.439192e-25	9.424488e-21	2.243926e-22
43	8102860	8089911	NM_005335	HCLS1	0.803814	5.667173e-25	9.819511e-21	2.283607e-22
44	8102860	7996290	NM_052999	CMTM1	0.802306	8.067478e-25	1.397852e-20	3.176936e-22
45	8102860	8064790	NM_014737	RASSF2	0.802205	8.258510e-25	1.430952e-20	3.179893e-22
46	8102860	8157945	NM_001099270	ZBTB34	0.800897	1.118983e-24	1.938862e-20	4.214918e-22
47	8102860	8068254	NM_000628	IL10RB	0.799217	1.647146e-24	2.854010e-20	6.072363e-22
48	8102860	8101511	NM_014991	WDFY3	0.798869	1.783756e-24	3.090715e-20	6.438989e-22
49	8102860	7957570	NM_005761	PLXNC1	0.798834	1.798006e-24	3.115406e-20	6.357970e-22
50	8102860	8036710	NM_004877	GMFG	0.798251	2.053836e-24	3.558682e-20	7.117365e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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