[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 17202.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
17202	7910124	NM_002107	H3F3A		H3 histone, family 3A

Fetching correlation data, please wait...
Getting list of correlations for id 17202.
Getting list of p-values for id 17202.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.108 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7910124	8046515	NM_002107	H3F3A	0.997960	6.712771e-125	1.163122e-120	1.163122e-120
2	7910124	8169740	NM_002107	H3F3A	0.982914	1.564867e-77	2.711444e-73	1.355722e-73
3	7910124	8102860	NM_002107	H3F3A	0.978469	2.077024e-72	3.598859e-68	1.199620e-68
4	7910124	8130556	NM_001024465	SOD2	0.864750	1.401944e-32	2.429148e-28	6.072869e-29
5	7910124	8054329	NM_173647	RNF149	0.861809	3.927129e-32	6.804537e-28	1.360907e-28
6	7910124	8116372	NM_018434	RNF130	0.860859	5.449013e-32	9.441504e-28	1.573584e-28
7	7910124	7980005	NM_001005743	NUMB	0.854495	4.603238e-31	7.976031e-27	1.139433e-27
8	7910124	8157941	NM_001099270	ZBTB34	0.853617	6.130140e-31	1.062169e-26	1.327712e-27
9	7910124	7927964	NM_002727	SRGN	0.852465	8.901401e-31	1.542346e-26	1.713717e-27
10	7910124	7919751	NM_021960	MCL1	0.849607	2.215414e-30	3.838648e-26	3.838648e-27
11	7910124	7983910	NM_020980	AQP9	0.840362	3.735666e-29	6.472789e-25	5.884353e-26
12	7910124	8103951	NM_001995	ACSL1	0.836855	1.040905e-28	1.803576e-24	1.502980e-25
13	7910124	7933084	NM_005746	NAMPT	0.836453	1.168871e-28	2.025303e-24	1.557925e-25
14	7910124	8085999	NM_017801	CMTM6	0.830898	5.622234e-28	9.741645e-24	6.958318e-25
15	7910124	8166065	NM_138636	TLR8	0.829551	8.159242e-28	1.413752e-23	9.425013e-25
16	7910124	8151756	NM_018710	TMEM55A	0.828075	1.222153e-27	2.117625e-23	1.323516e-24
17	7910124	8155883	NM_012383	OSTF1	0.825218	2.644376e-27	4.581910e-23	2.695241e-24
18	7910124	7950578	NM_001128620	PAK1	0.824732	3.010794e-27	5.216802e-23	2.898223e-24
19	7910124	8142120	NM_005746	NAMPT	0.824239	3.433653e-27	5.949491e-23	3.131311e-24
20	7910124	7922773	NM_000433	NCF2	0.823394	4.295939e-27	7.443574e-23	3.721787e-24
21	7910124	7965606	NM_002108	HAL	0.822852	4.956275e-27	8.587737e-23	4.089399e-24
22	7910124	8046003	NM_012198	GCA	0.822839	4.973583e-27	8.617728e-23	3.917149e-24
23	7910124	8068280	NM_005534	IFNGR2	0.822141	5.977153e-27	1.035661e-22	4.502875e-24
24	7910124	8008870	NM_030938	TMEM49	0.822108	6.027983e-27	1.044469e-22	4.351953e-24
25	7910124	8041508	NM_012413	QPCT	0.821833	6.479864e-27	1.122766e-22	4.491064e-24
26	7910124	7974533	NM_021255	PELI2	0.821182	7.680438e-27	1.330789e-22	5.118421e-24
27	7910124	8174474	NM_022977	ACSL4	0.821054	7.942816e-27	1.376252e-22	5.097228e-24
28	7910124	8047381	NM_003879	CFLAR	0.820098	1.018350e-26	1.764495e-22	6.301769e-24
29	7910124	8152845	BC017297	FAM49B	0.818832	1.411992e-26	2.446559e-22	8.436410e-24
30	7910124	8146550	NM_005625	SDCBP	0.815995	2.910089e-26	5.042311e-22	1.680770e-23
31	7910124	8157945	NM_001099270	ZBTB34	0.813962	4.849053e-26	8.401955e-22	2.710308e-23
32	7910124	7951372	NM_033306	CASP4	0.812754	6.548150e-26	1.134598e-21	3.545618e-23
33	7910124	7946478	NM_015213	DENND5A	0.810607	1.111086e-25	1.925179e-21	5.833875e-23
34	7910124	7955810	NM_018457	PRR13	0.810293	1.199764e-25	2.078831e-21	6.114207e-23
35	7910124	7954436	NM_006152	LRMP	0.809844	1.338595e-25	2.319384e-21	6.626810e-23
36	7910124	8162276	NM_005384	NFIL3	0.808846	1.705698e-25	2.955463e-21	8.209619e-23
37	7910124	7940191	NM_004177	STX3	0.808646	1.790217e-25	3.101910e-21	8.383540e-23
38	7910124	8101648	NM_016245	HSD17B11	0.807459	2.382955e-25	4.128946e-21	1.086565e-22
39	7910124	8166511	NM_005391	PDK3	0.806829	2.771886e-25	4.802847e-21	1.231499e-22
40	7910124	7979085	NM_002863	PYGL	0.806540	2.969760e-25	5.145703e-21	1.286426e-22
41	7910124	7957570	NM_005761	PLXNC1	0.806432	3.047853e-25	5.281015e-21	1.288053e-22
42	7910124	7952022	NM_001098526	AMICA1	0.806430	3.048959e-25	5.282931e-21	1.257841e-22
43	7910124	8064790	NM_014737	RASSF2	0.804647	4.656817e-25	8.068866e-21	1.876481e-22
44	7910124	7906377	NM_002432	MNDA	0.803786	5.705044e-25	9.885130e-21	2.246620e-22
45	7910124	8157947	NM_001099270	ZBTB34	0.803752	5.750710e-25	9.964255e-21	2.214279e-22
46	7910124	8120943	NM_016230	CYB5R4	0.802937	6.961817e-25	1.206274e-20	2.622335e-22
47	7910124	8001317	NM_153029	N4BP1	0.802861	7.085512e-25	1.227707e-20	2.612142e-22
48	7910124	7950838	NM_007166	PICALM	0.802840	7.120605e-25	1.233787e-20	2.570390e-22
49	7910124	8124088	NM_022113	KIF13A	0.802493	7.722757e-25	1.338122e-20	2.730861e-22
50	7910124	7995697	NM_017839	LPCAT2	0.801723	9.239496e-25	1.600927e-20	3.201855e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation