[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15089	8025076	NM_005428	VAV1		vav 1 guanine nucleotide exchange factor

Fetching correlation data, please wait...
Getting list of correlations for id 15089.
Getting list of p-values for id 15089.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8025076	8018364	NM_002086	GRB2	0.856405	2.452164e-31	4.248865e-27	4.248865e-27
2	8025076	8018305	NM_016185	HN1	0.832662	3.436274e-28	5.954031e-24	2.977016e-24
3	8025076	7973660	NM_016576	GMPR2	0.823030	4.729641e-27	8.195048e-23	2.731683e-23
4	8025076	8093462	NM_001017405	MAEA	0.822010	6.185704e-27	1.071797e-22	2.679493e-23
5	8025076	8080487	NM_006254	PRKCD	0.820360	9.513585e-27	1.648419e-22	3.296838e-23
6	8025076	8132539	NM_014063	DBNL	0.807574	2.318210e-25	4.016762e-21	6.694604e-22
7	8025076	7956593	NM_006812	OS9	0.803333	6.344932e-25	1.099386e-20	1.570552e-21
8	8025076	7983512	NM_021199	SQRDL	0.802010	8.643381e-25	1.497639e-20	1.872048e-21
9	8025076	7994756	NM_002720	PPP4C	0.801828	9.016539e-25	1.562296e-20	1.735884e-21
10	8025076	8061668	NM_002110	HCK	0.800308	1.281838e-24	2.221041e-20	2.221041e-21
11	8025076	7967841	NM_001161344	CHFR	0.799100	1.692008e-24	2.931742e-20	2.665220e-21
12	8025076	7921752	NM_001025598	ARHGAP30	0.795654	3.695697e-24	6.403535e-20	5.336279e-21
13	8025076	8036808	NM_018457	PRR13	0.794510	4.774590e-24	8.272932e-20	6.363794e-21
14	8025076	7958152	NM_002629	PGAM1	0.793573	5.881365e-24	1.019064e-19	7.279029e-21
15	8025076	8176282	NM_001029891	PGAM4	0.793526	5.943701e-24	1.029865e-19	6.865768e-21
16	8025076	8173729	NM_001029891	PGAM4	0.793526	5.943701e-24	1.029865e-19	6.436657e-21
17	8025076	7955810	NM_018457	PRR13	0.789591	1.409986e-23	2.443083e-19	1.437107e-20
18	8025076	7999233	NM_032569	GLYR1	0.789288	1.505990e-23	2.609429e-19	1.449683e-20
19	8025076	8089911	NM_005335	HCLS1	0.787844	2.057129e-23	3.564387e-19	1.875993e-20
20	8025076	8132646	NM_031443	CCM2	0.787075	2.426657e-23	4.204669e-19	2.102334e-20
21	8025076	8039796	NM_014453	CHMP2A	0.786313	2.856003e-23	4.948596e-19	2.356474e-20
22	8025076	7945803	NM_001014438	CARS	0.784550	4.152716e-23	7.195411e-19	3.270641e-20
23	8025076	8072744	NM_013416	NCF4	0.784162	4.507466e-23	7.810086e-19	3.395689e-20
24	8025076	7929624	NM_002629	PGAM1	0.783338	5.362106e-23	9.290921e-19	3.871217e-20
25	8025076	7978208	NM_012461	TINF2	0.782487	6.408358e-23	1.110376e-18	4.441505e-20
26	8025076	7900382	NM_006367	CAP1	0.780199	1.031123e-22	1.786627e-18	6.871643e-20
27	8025076	8116020	NM_006816	LMAN2	0.776334	2.273076e-22	3.938559e-18	1.458726e-19
28	8025076	8134552	NM_005720	ARPC1B	0.775992	2.436250e-22	4.221290e-18	1.507603e-19
29	8025076	8119000	NM_001315	MAPK14	0.775699	2.584678e-22	4.478471e-18	1.544300e-19
30	8025076	8093086	NM_005017	PCYT1A	0.775636	2.617829e-22	4.535912e-18	1.511971e-19
31	8025076	8082478	NM_016128	COPG	0.774399	3.357409e-22	5.817383e-18	1.876575e-19
32	8025076	7982531	NM_006305	ANP32A	0.773818	3.771482e-22	6.534846e-18	2.042139e-19
33	8025076	8030374	NM_004107	FCGRT	0.773296	4.185406e-22	7.252052e-18	2.197592e-19
34	8025076	8034762	NM_002730	PRKACA	0.771869	5.557712e-22	9.629848e-18	2.832308e-19
35	8025076	8077550	NM_001077525	MTMR14	0.771774	5.663079e-22	9.812417e-18	2.803548e-19
36	8025076	8065433	NM_020531	C20orf3	0.770011	8.014196e-22	1.388620e-17	3.857277e-19
37	8025076	7905028	CR541728	LSP1	0.769551	8.769524e-22	1.519495e-17	4.106744e-19
38	8025076	8009183	NM_203351	MAP3K3	0.769323	9.168931e-22	1.588701e-17	4.180791e-19
39	8025076	8015955	NM_020218	ATXN7L3	0.767207	1.383539e-21	2.397259e-17	6.146818e-19
40	8025076	7965480	NM_002629	PGAM1	0.767161	1.395739e-21	2.418397e-17	6.045993e-19
41	8025076	7905789	NM_000565	IL6R	0.766198	1.680590e-21	2.911958e-17	7.102336e-19
42	8025076	7960518	NM_001065	TNFRSF1A	0.765716	1.843713e-21	3.194602e-17	7.606195e-19
43	8025076	7900922	NM_004047	ATP6V0B	0.764363	2.388196e-21	4.138027e-17	9.623318e-19
44	8025076	8082431	NM_004637	RAB7A	0.763593	2.764938e-21	4.790808e-17	1.088820e-18
45	8025076	7963911	NM_001780	CD63	0.762710	3.268536e-21	5.663392e-17	1.258532e-18
46	8025076	8004030	NM_015528	RNF167	0.761691	3.961389e-21	6.863899e-17	1.492152e-18
47	8025076	8079950	NM_002070	GNAI2	0.761631	4.006094e-21	6.941359e-17	1.476885e-18
48	8025076	8036710	NM_004877	GMFG	0.761260	4.295650e-21	7.443072e-17	1.550640e-18
49	8025076	7973564	NM_176783	PSME1	0.759593	5.867385e-21	1.016642e-16	2.074779e-18
50	8025076	7995096	NM_001145808	ITGAM	0.757845	8.112455e-21	1.405645e-16	2.811290e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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