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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
16420 8065433 NM_020531 C20orf3 link to infopage chromosome 20 open reading frame 3

Fetching correlation data, please wait...
Getting list of correlations for id 16420.
Getting list of p-values for id 16420.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.116 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8065433 8041508 NM_012413 QPCT link to infopage 0.818351 1.597256e-26 2.767566e-22 2.767566e-22
2 8065433 8039796 NM_014453 CHMP2A link to infopage 0.802224 8.221769e-25 1.424586e-20 7.122930e-21
3 8065433 8093462 NM_001017405 MAEA link to infopage 0.799152 1.671962e-24 2.897008e-20 9.656694e-21
4 8065433 7900382 NM_006367 CAP1 link to infopage 0.797294 2.552669e-24 4.423009e-20 1.105752e-20
5 8065433 8018305 NM_016185 HN1 link to infopage 0.796292 3.201475e-24 5.547196e-20 1.109439e-20
6 8065433 8145624 NM_001440 EXTL3 link to infopage 0.795901 3.496150e-24 6.057779e-20 1.009630e-20
7 8065433 8018364 NM_002086 GRB2 link to infopage 0.790095 1.263509e-23 2.189282e-19 3.127546e-20
8 8065433 8119000 NM_001315 MAPK14 link to infopage 0.788593 1.750383e-23 3.032889e-19 3.791112e-20
9 8065433 7979085 NM_002863 PYGL link to infopage 0.786683 2.638770e-23 4.572196e-19 5.080218e-20
10 8065433 8096116 NM_032717 AGPAT9 link to infopage 0.774188 3.502104e-22 6.068096e-18 6.068096e-19
11 8065433 7994756 NM_002720 PPP4C link to infopage 0.773429 4.075834e-22 7.062197e-18 6.420180e-19
12 8065433 8179322 NM_005345 HSPA1A link to infopage 0.772311 5.091403e-22 8.821874e-18 7.351561e-19
13 8065433 8025076 NM_005428 VAV1 link to infopage 0.770011 8.014196e-22 1.388620e-17 1.068169e-18
14 8065433 7990810 NM_006441 MTHFS link to infopage 0.769137 9.507921e-22 1.647437e-17 1.176741e-18
15 8065433 8089911 NM_005335 HCLS1 link to infopage 0.765346 1.979193e-21 3.429347e-17 2.286231e-18
16 8065433 7979473 NM_016029 DHRS7 link to infopage 0.763423 2.855734e-21 4.948131e-17 3.092582e-18
17 8065433 8118310 NM_005345 HSPA1A link to infopage 0.762144 3.637494e-21 6.302686e-17 3.707462e-18
18 8065433 8030374 NM_004107 FCGRT link to infopage 0.759763 5.684234e-21 9.849073e-17 5.471707e-18
19 8065433 7963911 NM_001780 CD63 link to infopage 0.759599 5.859933e-21 1.015351e-16 5.343950e-18
20 8065433 7998637 NM_016332 SEPX1 link to infopage 0.759587 5.873402e-21 1.017684e-16 5.088422e-18
21 8065433 7983512 NM_021199 SQRDL link to infopage 0.755366 1.278886e-20 2.215927e-16 1.055203e-17
22 8065433 8103951 NM_001995 ACSL1 link to infopage 0.753801 1.699492e-20 2.944709e-16 1.338504e-17
23 8065433 7900922 NM_004047 ATP6V0B link to infopage 0.750541 3.053304e-20 5.290459e-16 2.300200e-17
24 8065433 8063509 NM_016407 C20orf43 link to infopage 0.749345 3.776763e-20 6.543998e-16 2.726666e-17
25 8065433 7955810 NM_018457 PRR13 link to infopage 0.747918 4.860188e-20 8.421248e-16 3.368499e-17
26 8065433 7995096 NM_001145808 ITGAM link to infopage 0.747384 5.338925e-20 9.250755e-16 3.557983e-17
27 8065433 8072744 NM_013416 NCF4 link to infopage 0.746950 5.761792e-20 9.983457e-16 3.697577e-17
28 8065433 7897620 NM_002631 PGD link to infopage 0.746318 6.435499e-20 1.115079e-15 3.982425e-17
29 8065433 7938880 NM_001098520 HTATIP2 link to infopage 0.745868 6.961704e-20 1.206254e-15 4.159498e-17
30 8065433 8140151 NM_181471 RFC2 link to infopage 0.744106 9.454684e-20 1.638213e-15 5.460710e-17
31 8065433 8013788 NM_004475 FLOT2 link to infopage 0.742620 1.221558e-19 2.116593e-15 6.827719e-17
32 8065433 7989661 NM_002537 OAZ2 link to infopage 0.742571 1.231875e-19 2.134469e-15 6.670216e-17
33 8065433 7982531 NM_006305 ANP32A link to infopage 0.741454 1.491836e-19 2.584904e-15 7.833043e-17
34 8065433 8178419 NM_005803 FLOT1 link to infopage 0.738574 2.432971e-19 4.215609e-15 1.239885e-16
35 8065433 8124828 NM_005803 FLOT1 link to infopage 0.738574 2.432971e-19 4.215609e-15 1.204460e-16
36 8065433 8179688 NM_005803 FLOT1 link to infopage 0.738574 2.432971e-19 4.215609e-15 1.171002e-16
37 8065433 8044919 NM_002881 RALB link to infopage 0.738104 2.633456e-19 4.562989e-15 1.233240e-16
38 8065433 8036808 NM_018457 PRR13 link to infopage 0.737749 2.795154e-19 4.843164e-15 1.274517e-16
39 8065433 8162276 NM_005384 NFIL3 link to infopage 0.737145 3.093614e-19 5.360305e-15 1.374437e-16
40 8065433 7990020 NM_006305 ANP32A link to infopage 0.736505 3.443174e-19 5.965988e-15 1.491497e-16
41 8065433 7973660 NM_016576 GMPR2 link to infopage 0.736344 3.537122e-19 6.128772e-15 1.494822e-16
42 8065433 8035477 NM_006532 ELL link to infopage 0.735204 4.276287e-19 7.409523e-15 1.764172e-16
43 8065433 8061668 NM_002110 HCK link to infopage 0.730931 8.638400e-19 1.496776e-14 3.480873e-16
44 8065433 7937465 NM_006755 TALDO1 link to infopage 0.730867 8.728827e-19 1.512444e-14 3.437372e-16
45 8065433 8033987 NM_002162 ICAM3 link to infopage 0.729155 1.152454e-18 1.996857e-14 4.437461e-16
46 8065433 8166065 NM_138636 TLR8 link to infopage 0.728913 1.198387e-18 2.076445e-14 4.514010e-16
47 8065433 8093976 NM_020773 TBC1D14 link to infopage 0.728066 1.373776e-18 2.380341e-14 5.064555e-16
48 8065433 7905571 NM_002965 S100A9 link to infopage 0.727166 1.587346e-18 2.750395e-14 5.729990e-16
49 8065433 8136662 NM_004668 MGAM link to infopage 0.726871 1.664340e-18 2.883802e-14 5.885310e-16
50 8065433 8108378 NM_001903 CTNNA1 link to infopage 0.726129 1.873858e-18 3.246833e-14 6.493667e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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