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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 15063.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
15063 8179688 NM_005803 FLOT1 link to infopage flotillin 1

Fetching correlation data, please wait...
Getting list of correlations for id 15063.
Getting list of p-values for id 15063.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.098 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8179688 8178419 NM_005803 FLOT1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8179688 8124828 NM_005803 FLOT1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 8179688 8072744 NM_013416 NCF4 link to infopage 0.854877 4.061807e-31 7.037893e-27 2.345964e-27
4 8179688 7996290 NM_052999 CMTM1 link to infopage 0.805744 3.590223e-25 6.220779e-21 1.555195e-21
5 8179688 8072461 NM_016733 LIMK2 link to infopage 0.801898 8.870111e-25 1.536924e-20 3.073848e-21
6 8179688 7963054 NM_006009 TUBA1A link to infopage 0.798573 1.908336e-24 3.306574e-20 5.510956e-21
7 8179688 8102860 NM_002107 H3F3A link to infopage 0.796571 3.006021e-24 5.208532e-20 7.440760e-21
8 8179688 8061668 NM_002110 HCK link to infopage 0.786818 2.563718e-23 4.442155e-19 5.552693e-20
9 8179688 8103951 NM_001995 ACSL1 link to infopage 0.783898 4.766174e-23 8.258349e-19 9.175944e-20
10 8179688 8092691 NM_001706 BCL6 link to infopage 0.782993 5.763741e-23 9.986835e-19 9.986835e-20
11 8179688 7955810 NM_018457 PRR13 link to infopage 0.782942 5.826185e-23 1.009503e-18 9.177301e-20
12 8179688 8064191 NM_199360 TPD52L2 link to infopage 0.773795 3.788559e-22 6.564437e-18 5.470364e-19
13 8179688 8039196 NM_001081450 LILRB3 link to infopage 0.773131 4.325698e-22 7.495138e-18 5.765490e-19
14 8179688 8036808 NM_018457 PRR13 link to infopage 0.770340 7.512795e-22 1.301742e-17 9.298157e-19
15 8179688 8130556 NM_001024465 SOD2 link to infopage 0.769517 8.828031e-22 1.529633e-17 1.019755e-18
16 8179688 7979085 NM_002863 PYGL link to infopage 0.768312 1.116609e-21 1.934748e-17 1.209217e-18
17 8179688 7960518 NM_001065 TNFRSF1A link to infopage 0.767440 1.322407e-21 2.291335e-17 1.347844e-18
18 8179688 8018305 NM_016185 HN1 link to infopage 0.765156 2.052811e-21 3.556905e-17 1.976059e-18
19 8179688 8036710 NM_004877 GMFG link to infopage 0.763464 2.833901e-21 4.910301e-17 2.584369e-18
20 8179688 8046515 NM_002107 H3F3A link to infopage 0.763423 2.855593e-21 4.947886e-17 2.473943e-18
21 8179688 8066939 NM_004776 B4GALT5 link to infopage 0.762942 3.128486e-21 5.420728e-17 2.581299e-18
22 8179688 7946559 NM_001017998 GNG10 link to infopage 0.762444 3.437604e-21 5.956336e-17 2.707426e-18
23 8179688 8042637 NM_001130978 DYSF link to infopage 0.762247 3.567513e-21 6.181430e-17 2.687578e-18
24 8179688 8081386 NM_031419 NFKBIZ link to infopage 0.761757 3.912467e-21 6.779132e-17 2.824638e-18
25 8179688 7956819 NM_178169 RASSF3 link to infopage 0.761492 4.112517e-21 7.125759e-17 2.850304e-18
26 8179688 8108066 NM_003337 UBE2B link to infopage 0.758719 6.901047e-21 1.195744e-16 4.599017e-18
27 8179688 7927215 NM_000698 ALOX5 link to infopage 0.757460 8.710134e-21 1.509205e-16 5.589648e-18
28 8179688 8025076 NM_005428 VAV1 link to infopage 0.757136 9.245166e-21 1.601910e-16 5.721107e-18
29 8179688 8016847 NM_005082 TRIM25 link to infopage 0.756890 9.674574e-21 1.676313e-16 5.780391e-18
30 8179688 7946478 NM_015213 DENND5A link to infopage 0.755972 1.144829e-20 1.983645e-16 6.612149e-18
31 8179688 7905789 NM_000565 IL6R link to infopage 0.755621 1.220678e-20 2.115069e-16 6.822804e-18
32 8179688 7983910 NM_020980 AQP9 link to infopage 0.754632 1.461770e-20 2.532808e-16 7.915026e-18
33 8179688 8044919 NM_002881 RALB link to infopage 0.753881 1.675289e-20 2.902773e-16 8.796282e-18
34 8179688 7973660 NM_016576 GMPR2 link to infopage 0.752201 2.268167e-20 3.930053e-16 1.155898e-17
35 8179688 7974533 NM_021255 PELI2 link to infopage 0.751627 2.514443e-20 4.356775e-16 1.244793e-17
36 8179688 7965606 NM_002108 HAL link to infopage 0.751359 2.638397e-20 4.571550e-16 1.269875e-17
37 8179688 8068280 NM_005534 IFNGR2 link to infopage 0.751190 2.719389e-20 4.711886e-16 1.273483e-17
38 8179688 8010271 NM_024419 PGS1 link to infopage 0.751087 2.769958e-20 4.799506e-16 1.263028e-17
39 8179688 8018364 NM_002086 GRB2 link to infopage 0.750558 3.044116e-20 5.274540e-16 1.352446e-17
40 8179688 7910124 NM_002107 H3F3A link to infopage 0.750378 3.143546e-20 5.446822e-16 1.361705e-17
41 8179688 8119000 NM_001315 MAPK14 link to infopage 0.748154 4.662372e-20 8.078492e-16 1.970364e-17
42 8179688 7976976 NM_014844 TECPR2 link to infopage 0.746030 6.767411e-20 1.172589e-15 2.791879e-17
43 8179688 7951372 NM_033306 CASP4 link to infopage 0.745739 7.120134e-20 1.233706e-15 2.869083e-17
44 8179688 7995096 NM_001145808 ITGAM link to infopage 0.744453 8.902775e-20 1.542584e-15 3.505872e-17
45 8179688 8089911 NM_005335 HCLS1 link to infopage 0.743543 1.042101e-19 1.805649e-15 4.012552e-17
46 8179688 8068583 NM_002243 KCNJ15 link to infopage 0.743301 1.086501e-19 1.882580e-15 4.092566e-17
47 8179688 8110055 NM_030627 CPEB4 link to infopage 0.741096 1.585899e-19 2.747887e-15 5.846569e-17
48 8179688 8041508 NM_012413 QPCT link to infopage 0.740512 1.751852e-19 3.035434e-15 6.323821e-17
49 8179688 8104607 link to infopage 0.740231 1.837462e-19 3.183771e-15 6.497491e-17
50 8179688 7905571 NM_002965 S100A9 link to infopage 0.740165 1.858477e-19 3.220182e-15 6.440365e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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