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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
16310 7995096 NM_001145808 ITGAM link to infopage integrin, alpha M (complement component 3 receptor 3 subunit)

Fetching correlation data, please wait...
Getting list of correlations for id 16310.
Getting list of p-values for id 16310.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.148 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7995096 8066848 NM_020820 PREX1 link to infopage 0.855733 3.063725e-31 5.308516e-27 5.308516e-27
2 7995096 8026638 NM_004145 MYO9B link to infopage 0.851168 1.349693e-30 2.338613e-26 1.169307e-26
3 7995096 8080487 NM_006254 PRKCD link to infopage 0.845634 7.629469e-30 1.321958e-25 4.406527e-26
4 7995096 7956593 NM_006812 OS9 link to infopage 0.839681 4.566397e-29 7.912196e-25 1.978049e-25
5 7995096 8009183 NM_203351 MAP3K3 link to infopage 0.827728 1.343497e-27 2.327878e-23 4.655755e-24
6 7995096 8033605 NM_012335 MYO1F link to infopage 0.827437 1.453768e-27 2.518943e-23 4.198239e-24
7 7995096 8061668 NM_002110 HCK link to infopage 0.827338 1.493685e-27 2.588108e-23 3.697297e-24
8 7995096 7927215 NM_000698 ALOX5 link to infopage 0.824664 3.065545e-27 5.311670e-23 6.639588e-24
9 7995096 8072744 NM_013416 NCF4 link to infopage 0.823439 4.244543e-27 7.354520e-23 8.171689e-24
10 7995096 7996976 NM_007014 WWP2 link to infopage 0.811543 8.831162e-26 1.530175e-21 1.530175e-22
11 7995096 7905789 NM_000565 IL6R link to infopage 0.811429 9.082264e-26 1.573684e-21 1.430622e-22
12 7995096 8039096 NM_144687 NLRP12 link to infopage 0.810494 1.142126e-25 1.978962e-21 1.649135e-22
13 7995096 7963721 NM_020898 CALCOCO1 link to infopage 0.809407 1.488549e-25 2.579209e-21 1.984007e-22
14 7995096 8079950 NM_002070 GNAI2 link to infopage 0.809355 1.507610e-25 2.612235e-21 1.865882e-22
15 7995096 8013191 NM_002018 FLII link to infopage 0.803998 5.426894e-25 9.403179e-21 6.268786e-22
16 7995096 7950197 NM_015242 ARAP1 link to infopage 0.798367 2.000457e-24 3.466192e-20 2.166370e-21
17 7995096 7934733 NM_145869 ANXA11 link to infopage 0.797097 2.669339e-24 4.625164e-20 2.720685e-21
18 7995096 8148476 NM_014957 DENND3 link to infopage 0.796540 3.027202e-24 5.245234e-20 2.914019e-21
19 7995096 8039196 NM_001081450 LILRB3 link to infopage 0.796477 3.070625e-24 5.320473e-20 2.800249e-21
20 7995096 8156373 NM_001083536 FGD3 link to infopage 0.794777 4.497831e-24 7.793391e-20 3.896696e-21
21 7995096 7997453 NM_002661 PLCG2 link to infopage 0.791610 9.071474e-24 1.571814e-19 7.484830e-21
22 7995096 7979085 NM_002863 PYGL link to infopage 0.791381 9.539712e-24 1.652946e-19 7.513391e-21
23 7995096 7919872 NM_018379 FAM63A link to infopage 0.789744 1.363854e-23 2.363150e-19 1.027457e-20
24 7995096 8123181 NM_000876 IGF2R link to infopage 0.789421 1.463220e-23 2.535322e-19 1.056384e-20
25 7995096 8030782 NM_014441 SIGLEC9 link to infopage 0.788699 1.710563e-23 2.963893e-19 1.185557e-20
26 7995096 8088106 NM_001135055 TKT link to infopage 0.788080 1.955074e-23 3.387556e-19 1.302906e-20
27 7995096 8036503 NM_170604 RASGRP4 link to infopage 0.787767 2.091543e-23 3.624017e-19 1.342228e-20
28 7995096 7921752 NM_001025598 ARHGAP30 link to infopage 0.786734 2.610387e-23 4.523017e-19 1.615363e-20
29 7995096 7970162 NM_015205 ATP11A link to infopage 0.785790 3.192272e-23 5.531250e-19 1.907328e-20
30 7995096 8176306 NM_001161531 CSF2RA link to infopage 0.785513 3.386554e-23 5.867882e-19 1.955961e-20
31 7995096 8165735 NM_001161531 CSF2RA link to infopage 0.785513 3.386554e-23 5.867882e-19 1.892865e-20
32 7995096 7931353 NM_006504 PTPRE link to infopage 0.785370 3.490947e-23 6.048764e-19 1.890239e-20
33 7995096 8072279 NM_153050 MTMR3 link to infopage 0.785353 3.503016e-23 6.069676e-19 1.839296e-20
34 7995096 7987475 NM_004573 PLCB2 link to infopage 0.785311 3.535011e-23 6.125114e-19 1.801504e-20
35 7995096 8086961 NM_004567 PFKFB4 link to infopage 0.784811 3.929900e-23 6.809338e-19 1.945525e-20
36 7995096 8015590 NM_012448 STAT5B link to infopage 0.784455 4.237363e-23 7.342079e-19 2.039466e-20
37 7995096 8018966 NM_003255 TIMP2 link to infopage 0.784017 4.647918e-23 8.053448e-19 2.176608e-20
38 7995096 7960518 NM_001065 TNFRSF1A link to infopage 0.782000 7.095236e-23 1.229391e-18 3.235241e-20
39 7995096 8145624 NM_001440 EXTL3 link to infopage 0.781706 7.542161e-23 1.306830e-18 3.350847e-20
40 7995096 8032410 NM_130807 MOBKL2A link to infopage 0.780420 9.851276e-23 1.706931e-18 4.267327e-20
41 7995096 7999044 NM_004380 CREBBP link to infopage 0.778872 1.355109e-22 2.347998e-18 5.726824e-20
42 7995096 8093462 NM_001017405 MAEA link to infopage 0.778670 1.412522e-22 2.447477e-18 5.827327e-20
43 7995096 7914904 NM_032017 STK40 link to infopage 0.777793 1.689905e-22 2.928098e-18 6.809531e-20
44 7995096 8157761 NM_001145001 NEK6 link to infopage 0.777519 1.787013e-22 3.096357e-18 7.037175e-20
45 7995096 8178955 NM_004761 RGL2 link to infopage 0.777402 1.830178e-22 3.171150e-18 7.046999e-20
46 7995096 8180144 NM_004761 RGL2 link to infopage 0.777402 1.830178e-22 3.171150e-18 6.893804e-20
47 7995096 8161056 NM_006289 TLN1 link to infopage 0.776265 2.305165e-22 3.994160e-18 8.498212e-20
48 7995096 8006820 NM_006148 LASP1 link to infopage 0.775188 2.865025e-22 4.964229e-18 1.034214e-19
49 7995096 7930139 NM_030912 TRIM8 link to infopage 0.774944 3.009069e-22 5.213814e-18 1.064044e-19
50 7995096 7996290 NM_052999 CMTM1 link to infopage 0.774869 3.055155e-22 5.293666e-18 1.058733e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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