[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 14838.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14838	8093462	NM_001017405	MAEA		macrophage erythroblast attacher

Fetching correlation data, please wait...
Getting list of correlations for id 14838.
Getting list of p-values for id 14838.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.127 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8093462	8072744	NM_013416	NCF4	0.825838	2.239135e-27	3.879750e-23	3.879750e-23
2	8093462	8025076	NM_005428	VAV1	0.822010	6.185704e-27	1.071797e-22	5.358985e-23
3	8093462	8018364	NM_002086	GRB2	0.800033	1.365852e-24	2.366611e-20	7.888704e-21
4	8093462	8065433	NM_020531	C20orf3	0.799152	1.671962e-24	2.897008e-20	7.242520e-21
5	8093462	8033987	NM_002162	ICAM3	0.796957	2.755159e-24	4.773863e-20	9.547727e-21
6	8093462	8089911	NM_005335	HCLS1	0.795663	3.688545e-24	6.391143e-20	1.065190e-20
7	8093462	7955810	NM_018457	PRR13	0.788243	1.887565e-23	3.270584e-19	4.672263e-20
8	8093462	8061668	NM_002110	HCK	0.783657	5.014196e-23	8.688098e-19	1.086012e-19
9	8093462	7995096	NM_001145808	ITGAM	0.778670	1.412522e-22	2.447477e-18	2.719419e-19
10	8093462	8064191	NM_199360	TPD52L2	0.777981	1.626340e-22	2.817960e-18	2.817960e-19
11	8093462	8036808	NM_018457	PRR13	0.777980	1.626441e-22	2.818134e-18	2.561940e-19
12	8093462	7900382	NM_006367	CAP1	0.771245	6.286955e-22	1.089341e-17	9.077839e-19
13	8093462	8018558	NM_004035	ACOX1	0.765861	1.793149e-21	3.106990e-17	2.389992e-18
14	8093462	8039796	NM_014453	CHMP2A	0.763872	2.622357e-21	4.543757e-17	3.245541e-18
15	8093462	7979085	NM_002863	PYGL	0.763757	2.680498e-21	4.644499e-17	3.096333e-18
16	8093462	7937465	NM_006755	TALDO1	0.761296	4.267044e-21	7.393508e-17	4.620942e-18
17	8093462	8145624	NM_001440	EXTL3	0.760357	5.087602e-21	8.815289e-17	5.185464e-18
18	8093462	8036710	NM_004877	GMFG	0.758919	6.650608e-21	1.152351e-16	6.401949e-18
19	8093462	7982531	NM_006305	ANP32A	0.758765	6.842712e-21	1.185637e-16	6.240193e-18
20	8093462	7973660	NM_016576	GMPR2	0.758713	6.909820e-21	1.197264e-16	5.986322e-18
21	8093462	8018305	NM_016185	HN1	0.756517	1.036043e-20	1.795152e-16	8.548342e-18
22	8093462	7965606	NM_002108	HAL	0.756067	1.124967e-20	1.949231e-16	8.860141e-18
23	8093462	8179322	NM_005345	HSPA1A	0.755911	1.157531e-20	2.005654e-16	8.720236e-18
24	8093462	7994756	NM_002720	PPP4C	0.753270	1.870814e-20	3.241560e-16	1.350650e-17
25	8093462	7956593	NM_006812	OS9	0.750691	2.972696e-20	5.150790e-16	2.060316e-17
26	8093462	7977803	NM_001077351	RBM23	0.749967	3.381919e-20	5.859850e-16	2.253789e-17
27	8093462	8132539	NM_014063	DBNL	0.749896	3.424607e-20	5.933816e-16	2.197710e-17
28	8093462	7980005	NM_001005743	NUMB	0.749798	3.484835e-20	6.038174e-16	2.156491e-17
29	8093462	8030374	NM_004107	FCGRT	0.748534	4.360065e-20	7.554685e-16	2.605064e-17
30	8093462	7994659	NM_017458	MVP	0.748200	4.624506e-20	8.012881e-16	2.670960e-17
31	8093462	8088106	NM_001135055	TKT	0.748038	4.758597e-20	8.245220e-16	2.659748e-17
32	8093462	8168500	NM_000291	PGK1	0.746974	5.737152e-20	9.940764e-16	3.106489e-17
33	8093462	8015590	NM_012448	STAT5B	0.745722	7.140771e-20	1.237281e-15	3.749338e-17
34	8093462	7905789	NM_000565	IL6R	0.744909	8.225905e-20	1.425303e-15	4.192066e-17
35	8093462	8118310	NM_005345	HSPA1A	0.742855	1.173186e-19	2.032779e-15	5.807940e-17
36	8093462	7993159	NM_014117	C16orf72	0.742714	1.202086e-19	2.082854e-15	5.785705e-17
37	8093462	8039096	NM_144687	NLRP12	0.740847	1.654772e-19	2.867223e-15	7.749252e-17
38	8093462	8102860	NM_002107	H3F3A	0.740317	1.810837e-19	3.137638e-15	8.256942e-17
39	8093462	7899192	NM_002953	RPS6KA1	0.739021	2.255914e-19	3.908822e-15	1.002262e-16
40	8093462	8090030	NM_024610	HSPBAP1	0.737813	2.765334e-19	4.791494e-15	1.197873e-16
41	8093462	8063873	NM_144498	OSBPL2	0.737712	2.812897e-19	4.873907e-15	1.188758e-16
42	8093462	8032410	NM_130807	MOBKL2A	0.737680	2.827703e-19	4.899561e-15	1.166562e-16
43	8093462	8009183	NM_203351	MAP3K3	0.737176	3.077438e-19	5.332278e-15	1.240065e-16
44	8093462	8080487	NM_006254	PRKCD	0.736953	3.194680e-19	5.535422e-15	1.258051e-16
45	8093462	8082431	NM_004637	RAB7A	0.736580	3.400417e-19	5.891902e-15	1.309312e-16
46	8093462	8046515	NM_002107	H3F3A	0.736165	3.644214e-19	6.314330e-15	1.372681e-16
47	8093462	7911619	NM_002074	GNB1	0.734017	5.206380e-19	9.021094e-15	1.919382e-16
48	8093462	7897620	NM_002631	PGD	0.733985	5.233686e-19	9.068408e-15	1.889252e-16
49	8093462	8165911	NM_005647	TBL1X	0.733326	5.834295e-19	1.010908e-14	2.063078e-16
50	8093462	8178419	NM_005803	FLOT1	0.733272	5.887068e-19	1.020052e-14	2.040105e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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