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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 16897.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
16897 8179322 NM_005345 HSPA1A link to infopage heat shock 70kDa protein 1A

Fetching correlation data, please wait...
Getting list of correlations for id 16897.
Getting list of p-values for id 16897.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.106 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8179322 8118310 NM_005345 HSPA1A link to infopage 0.997827 1.708593e-123 2.960479e-119 2.960479e-119
2 8179322 8118314 NM_005346 HSPA1B link to infopage 0.916964 6.732284e-43 1.166503e-38 5.832514e-39
3 8179322 8178086 NM_005346 HSPA1B link to infopage 0.904416 6.835106e-40 1.184319e-35 3.947729e-36
4 8179322 8179324 NM_005346 HSPA1B link to infopage 0.904416 6.835106e-40 1.184319e-35 2.960797e-36
5 8179322 7979085 NM_002863 PYGL link to infopage 0.836508 1.150715e-28 1.993844e-24 3.987689e-25
6 8179322 7897620 NM_002631 PGD link to infopage 0.832463 3.633063e-28 6.295008e-24 1.049168e-24
7 8179322 7980005 NM_001005743 NUMB link to infopage 0.823802 3.855652e-27 6.680688e-23 9.543840e-24
8 8179322 8033987 NM_002162 ICAM3 link to infopage 0.796514 3.045615e-24 5.277137e-20 6.596421e-21
9 8179322 7977803 NM_001077351 RBM23 link to infopage 0.795631 3.714621e-24 6.436324e-20 7.151471e-21
10 8179322 7946478 NM_015213 DENND5A link to infopage 0.792341 7.725152e-24 1.338537e-19 1.338537e-20
11 8179322 7922773 NM_000433 NCF2 link to infopage 0.790409 1.180035e-23 2.044647e-19 1.858770e-20
12 8179322 8103951 NM_001995 ACSL1 link to infopage 0.786619 2.675004e-23 4.634979e-19 3.862483e-20
13 8179322 8063873 NM_144498 OSBPL2 link to infopage 0.786617 2.676244e-23 4.637129e-19 3.567022e-20
14 8179322 8145624 NM_001440 EXTL3 link to infopage 0.786128 2.970737e-23 5.147396e-19 3.676711e-20
15 8179322 8061668 NM_002110 HCK link to infopage 0.784873 3.879039e-23 6.721210e-19 4.480807e-20
16 8179322 8018558 NM_004035 ACOX1 link to infopage 0.784657 4.060297e-23 7.035277e-19 4.397048e-20
17 8179322 8018364 NM_002086 GRB2 link to infopage 0.784063 4.602909e-23 7.975460e-19 4.691447e-20
18 8179322 8072279 NM_153050 MTMR3 link to infopage 0.783873 4.790587e-23 8.300650e-19 4.611472e-20
19 8179322 8136557 NM_001130966 TBXAS1 link to infopage 0.783017 5.735448e-23 9.937812e-19 5.230427e-20
20 8179322 8020110 NM_006868 RAB31 link to infopage 0.776806 2.065762e-22 3.579346e-18 1.789673e-19
21 8179322 8000184 NM_005849 IGSF6 link to infopage 0.776431 2.229251e-22 3.862623e-18 1.839344e-19
22 8179322 8101511 NM_014991 WDFY3 link to infopage 0.776284 2.296590e-22 3.979302e-18 1.808774e-19
23 8179322 8063509 NM_016407 C20orf43 link to infopage 0.775723 2.572268e-22 4.456969e-18 1.937813e-19
24 8179322 7950578 NM_001128620 PAK1 link to infopage 0.773376 4.119725e-22 7.138247e-18 2.974270e-19
25 8179322 8130556 NM_001024465 SOD2 link to infopage 0.773146 4.312505e-22 7.472277e-18 2.988911e-19
26 8179322 7961440 NM_024829 PLBD1 link to infopage 0.773039 4.405872e-22 7.634055e-18 2.936175e-19
27 8179322 7970162 NM_015205 ATP11A link to infopage 0.772563 4.843272e-22 8.391937e-18 3.108125e-19
28 8179322 8065433 NM_020531 C20orf3 link to infopage 0.772311 5.091403e-22 8.821874e-18 3.150669e-19
29 8179322 8047381 NM_003879 CFLAR link to infopage 0.769126 9.529641e-22 1.651201e-17 5.693796e-19
30 8179322 7955376 NM_173602 DIP2B link to infopage 0.767876 1.215297e-21 2.105745e-17 7.019150e-19
31 8179322 8089911 NM_005335 HCLS1 link to infopage 0.767320 1.353471e-21 2.345159e-17 7.565029e-19
32 8179322 7987892 NM_022473 ZFP106 link to infopage 0.766944 1.455519e-21 2.521978e-17 7.881180e-19
33 8179322 8085374 NM_002880 RAF1 link to infopage 0.766806 1.494956e-21 2.590310e-17 7.849424e-19
34 8179322 8058905 NM_000634 CXCR1 link to infopage 0.766795 1.498086e-21 2.595734e-17 7.634512e-19
35 8179322 8015607 NM_139276 STAT3 link to infopage 0.766644 1.542248e-21 2.672253e-17 7.635009e-19
36 8179322 7975459 NM_015556 SIPA1L1 link to infopage 0.764753 2.217145e-21 3.841647e-17 1.067124e-18
37 8179322 8124088 NM_022113 KIF13A link to infopage 0.764008 2.555558e-21 4.428015e-17 1.196761e-18
38 8179322 7975545 NM_000021 PSEN1 link to infopage 0.763218 2.968949e-21 5.144298e-17 1.353763e-18
39 8179322 8009457 NM_212472 PRKAR1A link to infopage 0.761196 4.347409e-21 7.532755e-17 1.931476e-18
40 8179322 8044919 NM_002881 RALB link to infopage 0.760560 4.897662e-21 8.486179e-17 2.121545e-18
41 8179322 8078014 NM_003043 SLC6A6 link to infopage 0.760063 5.374745e-21 9.312820e-17 2.271420e-18
42 8179322 8136662 NM_004668 MGAM link to infopage 0.758020 7.854893e-21 1.361017e-16 3.240517e-18
43 8179322 8157945 NM_001099270 ZBTB34 link to infopage 0.757872 8.072629e-21 1.398744e-16 3.252894e-18
44 8179322 8147469 NM_016134 PGCP link to infopage 0.757152 9.217873e-21 1.597181e-16 3.629956e-18
45 8179322 8083494 NM_007288 MME link to infopage 0.756462 1.046482e-20 1.813239e-16 4.029419e-18
46 8179322 8093462 NM_001017405 MAEA link to infopage 0.755911 1.157531e-20 2.005654e-16 4.360118e-18
47 8179322 8064790 NM_014737 RASSF2 link to infopage 0.755654 1.213351e-20 2.102374e-16 4.473136e-18
48 8179322 7968417 NM_023037 FRY link to infopage 0.755055 1.353358e-20 2.344963e-16 4.885339e-18
49 8179322 7971461 NM_002298 LCP1 link to infopage 0.754132 1.600614e-20 2.773383e-16 5.659966e-18
50 8179322 8041048 NM_005253 FOSL2 link to infopage 0.753931 1.659928e-20 2.876157e-16 5.752315e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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