[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14817	7994756	NM_002720	PPP4C		protein phosphatase 4, catalytic subunit

Fetching correlation data, please wait...
Getting list of correlations for id 14817.
Getting list of p-values for id 14817.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.130 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7994756	8134552	NM_005720	ARPC1B	0.883542	1.037606e-35	1.797860e-31	1.797860e-31
2	7994756	7963911	NM_001780	CD63	0.867901	4.525718e-33	7.841712e-29	3.920856e-29
3	7994756	8030374	NM_004107	FCGRT	0.863714	2.020726e-32	3.501313e-28	1.167104e-28
4	7994756	8116020	NM_006816	LMAN2	0.852097	1.002299e-30	1.736683e-26	4.341708e-27
5	7994756	8039796	NM_014453	CHMP2A	0.847184	4.729321e-30	8.194495e-26	1.638899e-26
6	7994756	7900922	NM_004047	ATP6V0B	0.837528	8.568245e-29	1.484620e-24	2.474366e-25
7	7994756	7994659	NM_017458	MVP	0.836428	1.177586e-28	2.040403e-24	2.914861e-25
8	7994756	8132539	NM_014063	DBNL	0.811029	1.001808e-25	1.735834e-21	2.169792e-22
9	7994756	7998637	NM_016332	SEPX1	0.806592	2.933318e-25	5.082561e-21	5.647290e-22
10	7994756	8179019	NM_018950	HLA-F	0.804250	5.113495e-25	8.860153e-21	8.860153e-22
11	7994756	8018305	NM_016185	HN1	0.802260	8.154109e-25	1.412862e-20	1.284420e-21
12	7994756	8025076	NM_005428	VAV1	0.801828	9.016539e-25	1.562296e-20	1.301913e-21
13	7994756	8018364	NM_002086	GRB2	0.801704	9.279353e-25	1.607833e-20	1.236795e-21
14	7994756	8003322	NM_000101	CYBA	0.801684	9.323959e-25	1.615562e-20	1.153973e-21
15	7994756	8177717	NM_018950	HLA-F	0.801562	9.590223e-25	1.661698e-20	1.107799e-21
16	7994756	8179103	NM_005516	HLA-E	0.801522	9.680635e-25	1.677364e-20	1.048352e-21
17	7994756	8177788	NM_005516	HLA-E	0.801522	9.680635e-25	1.677364e-20	9.866844e-22
18	7994756	7994769	NM_007074	CORO1A	0.799232	1.641480e-24	2.844193e-20	1.580107e-21
19	7994756	8117890	NM_005516	HLA-E	0.797291	2.554375e-24	4.425966e-20	2.329456e-21
20	7994756	7973564	NM_176783	PSME1	0.795320	3.983651e-24	6.902472e-20	3.451236e-21
21	7994756	7983512	NM_021199	SQRDL	0.792383	7.653436e-24	1.326111e-19	6.314813e-21
22	7994756	8006812	NM_002795	PSMB3	0.791307	9.695161e-24	1.679881e-19	7.635821e-21
23	7994756	7955810	NM_018457	PRR13	0.791132	1.007597e-23	1.745864e-19	7.590713e-21
24	7994756	8009653	NM_007261	CD300A	0.788919	1.631260e-23	2.826485e-19	1.177702e-20
25	7994756	8037144	NM_133328	DEDD2	0.787909	2.028393e-23	3.514596e-19	1.405838e-20
26	7994756	8036808	NM_018457	PRR13	0.786491	2.749105e-23	4.763373e-19	1.832067e-20
27	7994756	8001030	NM_013258	PYCARD	0.786375	2.818502e-23	4.883618e-19	1.808747e-20
28	7994756	7937465	NM_006755	TALDO1	0.783109	5.625580e-23	9.747442e-19	3.481229e-20
29	7994756	8002133	NM_002801	PSMB10	0.782735	6.084611e-23	1.054281e-18	3.635450e-20
30	7994756	8117760	NM_001098479	HLA-F	0.782628	6.222748e-23	1.078215e-18	3.594052e-20
31	7994756	7978208	NM_012461	TINF2	0.780593	9.504014e-23	1.646760e-18	5.312130e-20
32	7994756	7978201	NM_006156	NEDD8	0.780485	9.718472e-23	1.683920e-18	5.262249e-20
33	7994756	8030007	NM_001425	EMP3	0.778082	1.592970e-22	2.760139e-18	8.364059e-20
34	7994756	8033987	NM_002162	ICAM3	0.777858	1.667699e-22	2.889621e-18	8.498886e-20
35	7994756	8063509	NM_016407	C20orf43	0.777392	1.833657e-22	3.177178e-18	9.077650e-20
36	7994756	8140151	NM_181471	RFC2	0.776099	2.383900e-22	4.130583e-18	1.147384e-19
37	7994756	7958152	NM_002629	PGAM1	0.775812	2.526382e-22	4.377463e-18	1.183098e-19
38	7994756	8169659	NM_004541	NDUFA1	0.775772	2.546930e-22	4.413065e-18	1.161333e-19
39	7994756	8004030	NM_015528	RNF167	0.775279	2.813133e-22	4.874316e-18	1.249825e-19
40	7994756	8176282	NM_001029891	PGAM4	0.774899	3.036672e-22	5.261641e-18	1.315410e-19
41	7994756	8173729	NM_001029891	PGAM4	0.774899	3.036672e-22	5.261641e-18	1.283327e-19
42	7994756	8133442	NM_032464	LAT2	0.773793	3.790191e-22	6.567264e-18	1.563634e-19
43	7994756	7921738	NM_007122	USF1	0.773593	3.945199e-22	6.835846e-18	1.589732e-19
44	7994756	8065433	NM_020531	C20orf3	0.773429	4.075834e-22	7.062197e-18	1.605045e-19
45	7994756	7921487	NM_003564	TAGLN2	0.771900	5.523763e-22	9.571025e-18	2.126894e-19
46	7994756	7929624	NM_002629	PGAM1	0.771897	5.526261e-22	9.575353e-18	2.081598e-19
47	7994756	8019046	NM_014740	EIF4A3	0.771841	5.587902e-22	9.682158e-18	2.060034e-19
48	7994756	8132646	NM_031443	CCM2	0.770195	7.729368e-22	1.339268e-17	2.790141e-19
49	7994756	8089911	NM_005335	HCLS1	0.769189	9.411866e-22	1.630794e-17	3.328151e-19
50	7994756	8117800	NM_002116	HLA-A	0.767768	1.241119e-21	2.150486e-17	4.300973e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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