[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16213	8003322	NM_000101	CYBA		cytochrome b-245, alpha polypeptide

Fetching correlation data, please wait...
Getting list of correlations for id 16213.
Getting list of p-values for id 16213.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.132 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8003322	8134552	NM_005720	ARPC1B	0.807665	2.268185e-25	3.930085e-21	3.930085e-21
2	8003322	7994756	NM_002720	PPP4C	0.801684	9.323959e-25	1.615562e-20	8.077812e-21
3	8003322	8001030	NM_013258	PYCARD	0.790375	1.188741e-23	2.059731e-19	6.865770e-20
4	8003322	8177717	NM_018950	HLA-F	0.786062	3.013097e-23	5.220793e-19	1.305198e-19
5	8003322	8179019	NM_018950	HLA-F	0.772669	4.742490e-22	8.217313e-18	1.643463e-18
6	8003322	8037144	NM_133328	DEDD2	0.765934	1.768162e-21	3.063695e-17	5.106158e-18
7	8003322	8030007	NM_001425	EMP3	0.763004	3.091756e-21	5.357086e-17	7.652980e-18
8	8003322	8165309	NM_003792	EDF1	0.762799	3.214444e-21	5.569668e-17	6.962085e-18
9	8003322	7994769	NM_007074	CORO1A	0.761552	4.066337e-21	7.045741e-17	7.828601e-18
10	8003322	8002133	NM_002801	PSMB10	0.760270	5.170829e-21	8.959495e-17	8.959495e-18
11	8003322	7897745	NM_020350	AGTRAP	0.749808	3.478925e-20	6.027934e-16	5.479940e-17
12	8003322	7958152	NM_002629	PGAM1	0.749394	3.744400e-20	6.487922e-16	5.406602e-17
13	8003322	7929624	NM_002629	PGAM1	0.743287	1.089159e-19	1.887185e-15	1.451681e-16
14	8003322	8173729	NM_001029891	PGAM4	0.742229	1.306429e-19	2.263649e-15	1.616892e-16
15	8003322	8176282	NM_001029891	PGAM4	0.742229	1.306429e-19	2.263649e-15	1.509099e-16
16	8003322	8087860	NM_007284	TWF2	0.738071	2.648002e-19	4.588194e-15	2.867621e-16
17	8003322	8087100	NM_003365	UQCRC1	0.737655	2.839997e-19	4.920863e-15	2.894625e-16
18	8003322	7965480	NM_002629	PGAM1	0.735864	3.831608e-19	6.639027e-15	3.688348e-16
19	8003322	8117760	NM_001098479	HLA-F	0.734132	5.107929e-19	8.850508e-15	4.658162e-16
20	8003322	8004030	NM_015528	RNF167	0.731770	7.532357e-19	1.305132e-14	6.525658e-16
21	8003322	8177788	NM_005516	HLA-E	0.730333	9.521651e-19	1.649817e-14	7.856269e-16
22	8003322	8179103	NM_005516	HLA-E	0.730333	9.521651e-19	1.649817e-14	7.499166e-16
23	8003322	7973564	NM_176783	PSME1	0.728295	1.323996e-18	2.294088e-14	9.974298e-16
24	8003322	8117890	NM_005516	HLA-E	0.728118	1.362302e-18	2.360460e-14	9.835251e-16
25	8003322	7913256	NM_005216	DDOST	0.725494	2.073233e-18	3.592291e-14	1.436916e-15
26	8003322	8116020	NM_006816	LMAN2	0.722603	3.274500e-18	5.673727e-14	2.182203e-15
27	8003322	7900922	NM_004047	ATP6V0B	0.721354	3.982038e-18	6.899677e-14	2.555436e-15
28	8003322	7963911	NM_001780	CD63	0.717871	6.834368e-18	1.184191e-13	4.229253e-15
29	8003322	8019273	NM_005782	THOC4	0.716971	7.847243e-18	1.359692e-13	4.688593e-15
30	8003322	7998222	NM_006428	MRPL28	0.711999	1.668204e-17	2.890497e-13	9.634991e-15
31	8003322	7978208	NM_012461	TINF2	0.711513	1.794300e-17	3.108984e-13	1.002898e-14
32	8003322	7919619	NM_003516	HIST2H2AA3	0.710366	2.129806e-17	3.690314e-13	1.153223e-14
33	8003322	7905079	NM_003516	HIST2H2AA3	0.710366	2.129806e-17	3.690314e-13	1.118277e-14
34	8003322	8035553	NM_007263	COPE	0.709831	2.306292e-17	3.996112e-13	1.175327e-14
35	8003322	7911422	NM_016547	SDF4	0.706832	3.593009e-17	6.225607e-13	1.778745e-14
36	8003322	8006812	NM_002795	PSMB3	0.706598	3.718182e-17	6.442494e-13	1.789582e-14
37	8003322	8119648	NM_057161	KLHDC3	0.706344	3.859326e-17	6.687055e-13	1.807312e-14
38	8003322	7920271	NM_019554	S100A4	0.704944	4.735737e-17	8.205612e-13	2.159372e-14
39	8003322	8025076	NM_005428	VAV1	0.703266	6.041581e-17	1.046825e-12	2.684166e-14
40	8003322	8074969	NM_001355	DDT	0.701220	8.113155e-17	1.405766e-12	3.514416e-14
41	8003322	8030374	NM_004107	FCGRT	0.694534	2.089914e-16	3.621194e-12	8.832181e-14
42	8003322	7994659	NM_017458	MVP	0.691940	2.996069e-16	5.191288e-12	1.236021e-13
43	8003322	8042917	NM_001381	DOK1	0.691512	3.178522e-16	5.507426e-12	1.280797e-13
44	8003322	7921738	NM_007122	USF1	0.691445	3.208062e-16	5.558608e-12	1.263320e-13
45	8003322	8028514	NM_013234	EIF3K	0.690256	3.777579e-16	6.545411e-12	1.454536e-13
46	8003322	8035304	NM_004335	BST2	0.690182	3.816323e-16	6.612543e-12	1.437509e-13
47	8003322	7949603	NM_015399	BRMS1	0.689529	4.173566e-16	7.231538e-12	1.538625e-13
48	8003322	8043209	NM_016494	RNF181	0.689148	4.396359e-16	7.617571e-12	1.586994e-13
49	8003322	8075924	NM_002405	MFNG	0.688708	4.668482e-16	8.089078e-12	1.650832e-13
50	8003322	7904974	NR_003242	C1orf152	0.688322	4.920350e-16	8.525490e-12	1.705098e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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