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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 11093.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
11093 8035304 NM_004335 BST2 link to infopage bone marrow stromal cell antigen 2

Fetching correlation data, please wait...
Getting list of correlations for id 11093.
Getting list of p-values for id 11093.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.093 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8035304 7973564 NM_176783 PSME1 link to infopage 0.835113 1.716716e-28 2.974555e-24 2.974555e-24
2 8035304 8030007 NM_001425 EMP3 link to infopage 0.795154 4.134649e-24 7.164106e-20 3.582053e-20
3 8035304 7983512 NM_021199 SQRDL link to infopage 0.792426 7.580772e-24 1.313520e-19 4.378401e-20
4 8035304 7978123 NM_002818 PSME2 link to infopage 0.787619 2.158884e-23 3.740699e-19 9.351747e-20
5 8035304 8007446 NM_005533 IFI35 link to infopage 0.774809 3.092223e-22 5.357894e-18 1.071579e-18
6 8035304 7963911 NM_001780 CD63 link to infopage 0.753260 1.874368e-20 3.247717e-16 5.412862e-17
7 8035304 8002133 NM_002801 PSMB10 link to infopage 0.744682 8.556763e-20 1.482630e-15 2.118043e-16
8 8035304 8006812 NM_002795 PSMB3 link to infopage 0.740063 1.890895e-19 3.276353e-15 4.095441e-16
9 8035304 8048752 NM_022915 MRPL44 link to infopage 0.732588 6.588062e-19 1.141513e-14 1.268348e-15
10 8035304 8101158 NM_005506 SCARB2 link to infopage 0.732070 7.171709e-19 1.242642e-14 1.242642e-15
11 8035304 7940688 NM_002696 POLR2G link to infopage 0.731705 7.613704e-19 1.319226e-14 1.199297e-15
12 8035304 7921738 NM_007122 USF1 link to infopage 0.730131 9.838733e-19 1.704757e-14 1.420631e-15
13 8035304 8016980 hsa-mir-142 link to infopage 0.729978 1.008724e-18 1.747817e-14 1.344474e-15
14 8035304 8171802 NM_001037171 ACOT9 link to infopage 0.729578 1.076269e-18 1.864852e-14 1.332037e-15
15 8035304 7978201 NM_006156 NEDD8 link to infopage 0.725779 1.981130e-18 3.432703e-14 2.288469e-15
16 8035304 8169659 NM_004541 NDUFA1 link to infopage 0.723714 2.748713e-18 4.762695e-14 2.976684e-15
17 8035304 8179103 NM_005516 HLA-E link to infopage 0.720587 4.488018e-18 7.776388e-14 4.574346e-15
18 8035304 8177788 NM_005516 HLA-E link to infopage 0.720587 4.488018e-18 7.776388e-14 4.320216e-15
19 8035304 8179019 NM_018950 HLA-F link to infopage 0.720409 4.614391e-18 7.995355e-14 4.208082e-15
20 8035304 8117890 NM_005516 HLA-E link to infopage 0.720155 4.800011e-18 8.316979e-14 4.158490e-15
21 8035304 8117760 NM_001098479 HLA-F link to infopage 0.715739 9.473717e-18 1.641511e-13 7.816718e-15
22 8035304 8177717 NM_018950 HLA-F link to infopage 0.709681 2.358361e-17 4.086332e-13 1.857424e-14
23 8035304 8043100 NM_021103 TMSB10 link to infopage 0.709536 2.409703e-17 4.175292e-13 1.815345e-14
24 8035304 7958828 NM_001143906 TRAFD1 link to infopage 0.708296 2.895958e-17 5.017827e-13 2.090761e-14
25 8035304 8134552 NM_005720 ARPC1B link to infopage 0.707948 3.048603e-17 5.282314e-13 2.112926e-14
26 8035304 7900922 NM_004047 ATP6V0B link to infopage 0.706269 3.902166e-17 6.761283e-13 2.600494e-14
27 8035304 8028514 NM_013234 EIF3K link to infopage 0.701476 7.820553e-17 1.355067e-12 5.018767e-14
28 8035304 8116020 NM_006816 LMAN2 link to infopage 0.700614 8.849432e-17 1.533341e-12 5.476218e-14
29 8035304 7951397 NM_033292 CASP1 link to infopage 0.698354 1.220976e-16 2.115584e-12 7.295118e-14
30 8035304 8013741 NM_006923 SDF2 link to infopage 0.696819 1.516964e-16 2.628443e-12 8.761477e-14
31 8035304 8110022 NM_003945 ATP6V0E1 link to infopage 0.696720 1.538093e-16 2.665054e-12 8.596947e-14
32 8035304 8009653 NM_007261 CD300A link to infopage 0.695964 1.710825e-16 2.964346e-12 9.263582e-14
33 8035304 8074969 NM_001355 DDT link to infopage 0.695302 1.877094e-16 3.252441e-12 9.855881e-14
34 8035304 8059361 NM_020830 WDFY1 link to infopage 0.694207 2.187300e-16 3.789934e-12 1.114687e-13
35 8035304 7917472 NM_001514 GTF2B link to infopage 0.693371 2.457384e-16 4.257909e-12 1.216545e-13
36 8035304 8132515 NM_000712 BLVRA link to infopage 0.691695 3.099173e-16 5.369938e-12 1.491649e-13
37 8035304 7960553 NM_016497 MRPL51 link to infopage 0.691133 3.348622e-16 5.802157e-12 1.568150e-13
38 8035304 8003322 NM_000101 CYBA link to infopage 0.690182 3.816323e-16 6.612543e-12 1.740143e-13
39 8035304 7983360 NM_004048 B2M link to infopage 0.689078 4.438780e-16 7.691074e-12 1.972070e-13
40 8035304 7968297 NM_015932 POMP link to infopage 0.688554 4.767491e-16 8.260631e-12 2.065158e-13
41 8035304 8019046 NM_014740 EIF4A3 link to infopage 0.687068 5.834068e-16 1.010869e-11 2.465534e-13
42 8035304 8165011 NM_002003 FCN1 link to infopage 0.685823 6.902705e-16 1.196032e-11 2.847695e-13
43 8035304 7973618 NM_006084 IRF9 link to infopage 0.684651 8.081094e-16 1.400211e-11 3.256305e-13
44 8035304 8124911 NM_005514 HLA-B link to infopage 0.681958 1.157431e-15 2.005480e-11 4.557910e-13
45 8035304 7994659 NM_017458 MVP link to infopage 0.681109 1.295222e-15 2.244232e-11 4.987181e-13
46 8035304 7951408 NM_052889 CARD16 link to infopage 0.680623 1.381181e-15 2.393172e-11 5.202547e-13
47 8035304 8049180 NM_004846 EIF4E2 link to infopage 0.680601 1.385155e-15 2.400058e-11 5.106506e-13
48 8035304 8065855 NR_026728 EDEM2 link to infopage 0.679661 1.567872e-15 2.716652e-11 5.659691e-13
49 8035304 8027862 NM_005306 FFAR2 link to infopage 0.677785 2.004669e-15 3.473489e-11 7.088753e-13
50 8035304 8179731 link to infopage 0.677310 2.132887e-15 3.695653e-11 7.391306e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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