[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 13724.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13724	7960553	NM_016497	MRPL51		mitochondrial ribosomal protein L51

Fetching correlation data, please wait...
Getting list of correlations for id 13724.
Getting list of p-values for id 13724.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.250 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7960553	7978201	NM_006156	NEDD8	0.846044	6.726502e-30	1.165501e-25	1.165501e-25
2	7960553	8028514	NM_013234	EIF3K	0.831735	4.454135e-28	7.717681e-24	3.858840e-24
3	7960553	7912670	NM_006004	UQCRH	0.819547	1.174252e-26	2.034626e-22	6.782087e-23
4	7960553	8042259	NM_005917	MDH1	0.818180	1.669004e-26	2.891883e-22	7.229707e-23
5	7960553	7950644	NM_004549	NDUFC2	0.812569	6.855157e-26	1.187793e-21	2.375586e-22
6	7960553	7899737	NM_003757	EIF3I	0.809711	1.382559e-25	2.395560e-21	3.992601e-22
7	7960553	7897404	NM_007262	PARK7	0.809223	1.556690e-25	2.697277e-21	3.853254e-22
8	7960553	8139706	NM_014302	SEC61G	0.807009	2.654968e-25	4.600263e-21	5.750328e-22
9	7960553	7918345	NM_002790	PSMA5	0.804640	4.664626e-25	8.082397e-21	8.980441e-22
10	7960553	7974603	NM_002788	PSMA3	0.801001	1.092422e-24	1.892840e-20	1.892840e-21
11	7960553	7989315	NM_004492	GTF2A2	0.800631	1.189965e-24	2.061853e-20	1.874411e-21
12	7960553	7959597	NM_006815	TMED2	0.800523	1.219746e-24	2.113453e-20	1.761211e-21
13	7960553	8088384	NM_000925	PDHB	0.799368	1.591032e-24	2.756780e-20	2.120600e-21
14	7960553	8136631	NM_003143	SSBP1	0.795353	3.954324e-24	6.851658e-20	4.894041e-21
15	7960553	7990566	NM_000126	ETFA	0.792105	8.137213e-24	1.409935e-19	9.399566e-21
16	7960553	8164067	NM_002799	PSMB7	0.791976	8.371241e-24	1.450485e-19	9.065531e-21
17	7960553	7975645	NM_021188	ZNF410	0.785943	3.090527e-23	5.354957e-19	3.149974e-20
18	7960553	8093156	NM_007362	NCBP2	0.785788	3.193937e-23	5.534135e-19	3.074519e-20
19	7960553	7977657	NM_031314	HNRNPC	0.783518	5.162929e-23	8.945807e-19	4.708320e-20
20	7960553	7940688	NM_002696	POLR2G	0.780833	9.042374e-23	1.566772e-18	7.833861e-20
21	7960553	8092265	NM_020409	MRPL47	0.778594	1.434563e-22	2.485666e-18	1.183651e-19
22	7960553	7906662	NM_016406	UFC1	0.778164	1.566687e-22	2.714599e-18	1.233909e-19
23	7960553	8001185	NM_005880	DNAJA2	0.777735	1.709902e-22	2.962747e-18	1.288151e-19
24	7960553	8123148	NM_014161	MRPL18	0.777735	1.710038e-22	2.962983e-18	1.234576e-19
25	7960553	8067978	NM_021130	PPIA	0.776147	2.360824e-22	4.090600e-18	1.636240e-19
26	7960553	8052562	NM_006430	CCT4	0.774392	3.362036e-22	5.825399e-18	2.240538e-19
27	7960553	7916372	NM_004872	TMEM59	0.772997	4.442916e-22	7.698240e-18	2.851200e-19
28	7960553	8132943	NM_001762	CCT6A	0.772569	4.837397e-22	8.381758e-18	2.993485e-19
29	7960553	8108015	NM_002154	HSPA4	0.772149	5.258102e-22	9.110714e-18	3.141626e-19
30	7960553	8009227	NM_002805	PSMC5	0.772091	5.318263e-22	9.214955e-18	3.071652e-19
31	7960553	7975976	NM_012111	AHSA1	0.771150	6.405642e-22	1.109906e-17	3.580341e-19
32	7960553	8047059	NM_031314	HNRNPC	0.769767	8.406216e-22	1.456545e-17	4.551703e-19
33	7960553	8117888	NM_006325	RAN	0.769705	8.509603e-22	1.474459e-17	4.468057e-19
34	7960553	8019046	NM_014740	EIF4A3	0.769258	9.286581e-22	1.609086e-17	4.732606e-19
35	7960553	8053366	NM_003849	SUCLG1	0.768803	1.014886e-21	1.758493e-17	5.024267e-19
36	7960553	8141133	NM_006304	SHFM1	0.768687	1.038137e-21	1.798781e-17	4.996613e-19
37	7960553	8073645	NM_015380	SAMM50	0.766746	1.512267e-21	2.620306e-17	7.081907e-19
38	7960553	8043100	NM_021103	TMSB10	0.766489	1.589079e-21	2.753398e-17	7.245784e-19
39	7960553	8116020	NM_006816	LMAN2	0.765906	1.777622e-21	3.080085e-17	7.897653e-19
40	7960553	8020058	NM_021074	NDUFV2	0.765814	1.809381e-21	3.135114e-17	7.837786e-19
41	7960553	7989619	NM_000942	PPIB	0.765266	2.009712e-21	3.482229e-17	8.493240e-19
42	7960553	8101945	NM_002106	H2AFZ	0.763443	2.845253e-21	4.929971e-17	1.173803e-18
43	7960553	8069532	NM_006948	HSPA13	0.762836	3.192066e-21	5.530893e-17	1.286254e-18
44	7960553	8015712	NM_001040431	CCDC56	0.762807	3.209399e-21	5.560926e-17	1.263847e-18
45	7960553	7944216	NM_006476	ATP5L	0.762646	3.308609e-21	5.732827e-17	1.273962e-18
46	7960553	8000323	NM_005003	NDUFAB1	0.762364	3.489627e-21	6.046477e-17	1.314452e-18
47	7960553	8089249	NM_000986	RPL24	0.762216	3.588472e-21	6.217745e-17	1.322925e-18
48	7960553	7906703	NM_004550	NDUFS2	0.760530	4.925650e-21	8.534674e-17	1.778057e-18
49	7960553	8063369	NM_018683	RNF114	0.760504	4.949747e-21	8.576426e-17	1.750291e-18
50	7960553	7936871	NM_000274	OAT	0.758600	7.055132e-21	1.222443e-16	2.444886e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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Remove	"self correlations", i.e. correlations of a variable with itself
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