[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 11086.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
11086	8108015	NM_002154	HSPA4		heat shock 70kDa protein 4

Fetching correlation data, please wait...
Getting list of correlations for id 11086.
Getting list of p-values for id 11086.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.104 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8108015	8132943	NM_001762	CCT6A	0.877604	1.149845e-34	1.992337e-30	1.992337e-30
2	8108015	7903519	NM_018061	PRPF38B	0.877103	1.400118e-34	2.425985e-30	1.212993e-30
3	8108015	7989253	NM_024755	SLTM	0.876172	2.014957e-34	3.491316e-30	1.163772e-30
4	8108015	7944285	NM_001655	ARCN1	0.868393	3.783678e-33	6.555980e-29	1.638995e-29
5	8108015	8148333	NM_015137	EFR3A	0.867991	4.380846e-33	7.590692e-29	1.518138e-29
6	8108015	8146243	NM_032410	HOOK3	0.867219	5.795259e-33	1.004144e-28	1.673574e-29
7	8108015	8101043	NM_203505	G3BP2	0.863305	2.332048e-32	4.040740e-28	5.772486e-29
8	8108015	7967304	NM_198261	RSRC2	0.860741	5.674804e-32	9.832734e-28	1.229092e-28
9	8108015	8091048	NR_023350	COPB2	0.860644	5.866652e-32	1.016515e-27	1.129461e-28
10	8108015	8163275	NM_001080398	KIAA0368	0.860453	6.261853e-32	1.084991e-27	1.084991e-28
11	8108015	7980833	NM_032560	SMEK1	0.858681	1.144287e-31	1.982707e-27	1.802461e-28
12	8108015	7924351	NM_004446	EPRS	0.857553	1.672321e-31	2.897631e-27	2.414693e-28
13	8108015	7938448	NM_017944	USP47	0.856010	2.795456e-31	4.843687e-27	3.725913e-28
14	8108015	7970546	NM_152726	EFHA1	0.855453	3.360732e-31	5.823140e-27	4.159386e-28
15	8108015	8001185	NM_005880	DNAJA2	0.855298	3.536373e-31	6.127474e-27	4.084982e-28
16	8108015	8092564	NM_004593	TRA2B	0.854959	3.953682e-31	6.850545e-27	4.281590e-28
17	8108015	8063283	NM_001316	CSE1L	0.854860	4.084874e-31	7.077861e-27	4.163448e-28
18	8108015	8150797	NM_015941	ATP6V1H	0.854135	5.179001e-31	8.973656e-27	4.985364e-28
19	8108015	8095163	NM_001024924	EXOC1	0.853424	6.526465e-31	1.130841e-26	5.951792e-28
20	8108015	7973770	NM_016106	SCFD1	0.853399	6.579295e-31	1.139994e-26	5.699972e-28
21	8108015	8015490	NM_003315	DNAJC7	0.853288	6.820779e-31	1.181836e-26	5.627793e-28
22	8108015	7980463	NM_012245	SNW1	0.852986	7.522573e-31	1.303436e-26	5.924710e-28
23	8108015	8155770	NM_015110	SMC5	0.852969	7.565290e-31	1.310838e-26	5.699295e-28
24	8108015	8001211	NM_030790	ITFG1	0.851687	1.143066e-30	1.980591e-26	8.252464e-28
25	8108015	7943176	NM_004268	MED17	0.850476	1.682716e-30	2.915642e-26	1.166257e-27
26	8108015	8084146	NM_001013439	FXR1	0.849774	2.101547e-30	3.641351e-26	1.400520e-27
27	8108015	8087951	NM_018165	PBRM1	0.849563	2.246716e-30	3.892885e-26	1.441809e-27
28	8108015	8014081	NM_018428	UTP6	0.849486	2.301856e-30	3.988425e-26	1.424438e-27
29	8108015	7931873	NM_001494	GDI2	0.848720	2.928827e-30	5.074779e-26	1.749924e-27
30	8108015	7939137	NM_006360	EIF3M	0.847627	4.120969e-30	7.140403e-26	2.380134e-27
31	8108015	7971820	NM_016075	VPS36	0.847526	4.252856e-30	7.368923e-26	2.377072e-27
32	8108015	8154531	NM_017925	DENND4C	0.845715	7.442743e-30	1.289604e-25	4.030013e-27
33	8108015	8082940	NM_015396	ARMC8	0.845388	8.229439e-30	1.425915e-25	4.320954e-27
34	8108015	7981335	NM_001017963	HSP90AA1	0.844844	9.718262e-30	1.683883e-25	4.952598e-27
35	8108015	7934852	NM_005271	GLUD1	0.844464	1.091167e-29	1.890666e-25	5.401901e-27
36	8108015	8021015	NM_002647	PIK3C3	0.844324	1.138382e-29	1.972474e-25	5.479094e-27
37	8108015	8123524	NM_018303	EXOC2	0.844111	1.214602e-29	2.104540e-25	5.687947e-27
38	8108015	7957633	NM_006838	METAP2	0.843594	1.420701e-29	2.461648e-25	6.478022e-27
39	8108015	7978718	NM_006364	SEC23A	0.843559	1.435929e-29	2.488035e-25	6.379577e-27
40	8108015	7995552	NM_015247	CYLD	0.843392	1.510180e-29	2.616688e-25	6.541721e-27
41	8108015	7929168	NM_025235	TNKS2	0.843325	1.541129e-29	2.670313e-25	6.512960e-27
42	8108015	8094704	NM_005339	UBE2K	0.843084	1.657244e-29	2.871506e-25	6.836919e-27
43	8108015	8152782	NM_014846	KIAA0196	0.842947	1.726738e-29	2.991919e-25	6.957951e-27
44	8108015	8157700	NM_012197	RABGAP1	0.842905	1.748963e-29	3.030427e-25	6.887335e-27
45	8108015	7969935	NM_000123	ERCC5	0.842505	1.972320e-29	3.417439e-25	7.594308e-27
46	8108015	8078834	NM_020839	WDR48	0.842143	2.198616e-29	3.809543e-25	8.281614e-27
47	8108015	7965652	NM_002595	CDK17	0.841773	2.455700e-29	4.254992e-25	9.053175e-27
48	8108015	7923712	NM_005057	RBBP5	0.841314	2.816277e-29	4.879764e-25	1.016618e-26
49	8108015	8023195	NM_005901	SMAD2	0.841281	2.843777e-29	4.927413e-25	1.005594e-26
50	8108015	8100834	NM_002092	GRSF1	0.841049	3.047409e-29	5.280246e-25	1.056049e-26

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
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