Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
17078	8043100	NM_021103	TMSB10		thymosin beta 10

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8043100	8028514	NM_013234	EIF3K		0.879130	6.270678e-35	1.086520e-30	1.086520e-30
2	8043100	8089249	NM_000986	RPL24		0.876918	1.505924e-34	2.609314e-30	1.304657e-30
3	8043100	8165309	NM_003792	EDF1		0.843325	1.540872e-29	2.669869e-25	8.899562e-26
4	8043100	8013348	NM_002952	RPS2		0.833368	2.816944e-28	4.880919e-24	1.220230e-24
5	8043100	7998655	NM_002952	RPS2		0.833255	2.908071e-28	5.038814e-24	1.007763e-24
6	8043100	7939068	NM_001028	RPS25		0.831442	4.833690e-28	8.375334e-24	1.395889e-24
7	8043100	8015712	NM_001040431	CCDC56		0.827475	1.439125e-27	2.493572e-23	3.562246e-24
8	8043100	8029129	NM_001022	RPS19		0.824965	2.829106e-27	4.901992e-23	6.127490e-24
9	8043100	8172358	NM_153477	UXT		0.823614	4.052570e-27	7.021887e-23	7.802097e-24
10	8043100	7899737	NM_003757	EIF3I		0.821004	8.046378e-27	1.394196e-22	1.394196e-23
11	8043100	7911559	NM_017971	MRPL20		0.820100	1.017759e-26	1.763472e-22	1.603156e-23
12	8043100	8039939	NM_017971	MRPL20		0.820100	1.017759e-26	1.763472e-22	1.469560e-23
13	8043100	8164100	NM_007209	RPL35		0.819653	1.142473e-26	1.979564e-22	1.522741e-23
14	8043100	8125835	NM_001014	RPS10		0.819299	1.251988e-26	2.169320e-22	1.549514e-23
15	8043100	7942586	NM_001005	RPS3		0.814697	4.034014e-26	6.989736e-22	4.659824e-23
16	8043100	8009227	NM_002805	PSMC5		0.813863	4.969742e-26	8.611072e-22	5.381920e-23
17	8043100	7918050	NM_002295	RPSA		0.813213	5.843518e-26	1.012506e-21	5.955920e-23
18	8043100	7912670	NM_006004	UQCRH		0.812176	7.554064e-26	1.308893e-21	7.271626e-23
19	8043100	8078905	NM_002295	RPSA		0.810294	1.199357e-25	2.078126e-21	1.093751e-22
20	8043100	8000323	NM_005003	NDUFAB1		0.808592	1.813530e-25	3.142304e-21	1.571152e-22
21	8043100	7920271	NM_019554	S100A4		0.804333	5.014803e-25	8.689149e-21	4.137690e-22
22	8043100	8001782	NM_002954	RPS27A		0.803483	6.124713e-25	1.061229e-20	4.823768e-22
23	8043100	8042052	NM_002954	RPS27A		0.801450	9.843822e-25	1.705639e-20	7.415822e-22
24	8043100	8073645	NM_015380	SAMM50		0.801346	1.008512e-24	1.747448e-20	7.281035e-22
25	8043100	8076209	NM_000967	RPL3		0.799846	1.425743e-24	2.470385e-20	9.881540e-22
26	8043100	8172154	NM_002952	RPS2		0.798276	2.042031e-24	3.538227e-20	1.360856e-21
27	8043100	8126450	NM_000986	RPL24		0.796697	2.922291e-24	5.063454e-20	1.875353e-21
28	8043100	8115158	NM_001025071	RPS14		0.795323	3.980314e-24	6.896689e-20	2.463103e-21
29	8043100	8029958	NM_015710	GLTSCR2		0.794740	4.535429e-24	7.858537e-20	2.709840e-21
30	8043100	8030351	NM_012423	RPL13A		0.791852	8.603175e-24	1.490672e-19	4.968907e-21
31	8043100	8036737	NM_001020	RPS16		0.791633	9.026511e-24	1.564024e-19	5.045238e-21
32	8043100	7901038	NM_001012	RPS8		0.785396	3.471303e-23	6.014726e-19	1.879602e-20
33	8043100	8075798	NM_003753	EIF3D		0.783536	5.143442e-23	8.912041e-19	2.700619e-20
34	8043100	8073343	CR605850			0.781372	8.085742e-23	1.401016e-18	4.120637e-20
35	8043100	7940688	NM_002696	POLR2G		0.781288	8.227744e-23	1.425621e-18	4.073203e-20
36	8043100	8169659	NM_004541	NDUFA1		0.779746	1.132185e-22	1.961737e-18	5.449270e-20
37	8043100	7897404	NM_007262	PARK7		0.777853	1.669259e-22	2.892324e-18	7.817093e-20
38	8043100	8064502	NM_003091	SNRPB		0.777070	1.958017e-22	3.392656e-18	8.928043e-20
39	8043100	7978201	NM_006156	NEDD8		0.775320	2.790138e-22	4.834473e-18	1.239608e-19
40	8043100	7929243	NM_017838	NHP2		0.775272	2.816955e-22	4.880939e-18	1.220235e-19
41	8043100	7978123	NM_002818	PSME2		0.773683	3.874797e-22	6.713860e-18	1.637527e-19
42	8043100	8042720	NM_006429	CCT7		0.773412	4.089650e-22	7.086137e-18	1.687175e-19
43	8043100	7908407	NM_002954	RPS27A		0.772663	4.747643e-22	8.226241e-18	1.913079e-19
44	8043100	8123148	NM_014161	MRPL18		0.771336	6.175270e-22	1.069989e-17	2.431793e-19
45	8043100	8085026	NM_000996	RPL35A		0.770651	7.067332e-22	1.224557e-17	2.721237e-19
46	8043100	8125750	NM_000976	RPL12		0.770519	7.253046e-22	1.256735e-17	2.732033e-19
47	8043100	8086148	NM_000992	RPL29		0.770146	7.805071e-22	1.352385e-17	2.877414e-19
48	8043100	8160308	NM_001010	RPS6		0.769683	8.546523e-22	1.480856e-17	3.085117e-19
49	8043100	8047635	NM_000976	RPL12		0.768993	9.779833e-22	1.694552e-17	3.458269e-19
50	8043100	7915733	NM_002574	PRDX1		0.768968	9.828356e-22	1.702959e-17	3.405919e-19

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.