[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 4 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
6788	7911566	AK301440	MRPL20		mitochondrial ribosomal protein L20
6789	8039945	AK301440	MRPL20		mitochondrial ribosomal protein L20
9857	7911559	NM_017971	MRPL20		mitochondrial ribosomal protein L20
9858	8039939	NM_017971	MRPL20		mitochondrial ribosomal protein L20

Fetching correlation data, please wait...
Getting list of correlations for id 6788.
Getting list of p-values for id 6788.
1 of 4 done.
Getting list of correlations for id 6789.
Getting list of p-values for id 6789.
2 of 4 done.
Getting list of correlations for id 9857.
Getting list of p-values for id 9857.
3 of 4 done.
Getting list of correlations for id 9858.
Getting list of p-values for id 9858.
4 of 4 done.
Calculating corrections for multiple testing (n=69308), please wait...
Done; whole program took 0.349 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8039945	7911566	AK301440	MRPL20	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7911566	8039945	AK301440	MRPL20	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7911559	8039939	NM_017971	MRPL20	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8039939	7911559	NM_017971	MRPL20	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8039939	8015712	NM_001040431	CCDC56	0.850479	1.680803e-30	1.164931e-25	2.329862e-26
6	7911559	8015712	NM_001040431	CCDC56	0.850479	1.680803e-30	1.164931e-25	1.941552e-26
7	7911559	8028514	NM_013234	EIF3K	0.845230	8.635812e-30	5.985308e-25	8.550440e-26
8	8039939	8028514	NM_013234	EIF3K	0.845230	8.635812e-30	5.985308e-25	7.481635e-26
9	8039939	8172358	NM_153477	UXT	0.833699	2.565048e-28	1.777784e-23	1.975315e-24
10	7911559	8172358	NM_153477	UXT	0.833699	2.565048e-28	1.777784e-23	1.777784e-24
11	7911559	7942586	NM_001005	RPS3	0.825161	2.684640e-27	1.860671e-22	1.691519e-23
12	8039939	7942586	NM_001005	RPS3	0.825161	2.684640e-27	1.860671e-22	1.550559e-23
13	7911559	8042720	NM_006429	CCT7	0.822539	5.383270e-27	3.731036e-22	2.870028e-23
14	8039939	8042720	NM_006429	CCT7	0.822539	5.383270e-27	3.731036e-22	2.665026e-23
15	7911559	8064502	NM_003091	SNRPB	0.821723	6.669283e-27	4.622347e-22	3.081564e-23
16	8039939	8064502	NM_003091	SNRPB	0.821723	6.669283e-27	4.622347e-22	2.888967e-23
17	7911559	8043100	NM_021103	TMSB10	0.820100	1.017759e-26	7.053887e-22	4.149345e-23
18	8039939	8043100	NM_021103	TMSB10	0.820100	1.017759e-26	7.053887e-22	3.918826e-23
19	7911559	7897404	NM_007262	PARK7	0.819638	1.146962e-26	7.949367e-22	4.183877e-23
20	8039939	7897404	NM_007262	PARK7	0.819638	1.146962e-26	7.949367e-22	3.974683e-23
21	7911559	7940688	NM_002696	POLR2G	0.817971	1.760807e-26	1.220380e-21	5.811334e-23
22	8039939	7940688	NM_002696	POLR2G	0.817971	1.760807e-26	1.220380e-21	5.547183e-23
23	8039939	8139706	NM_014302	SEC61G	0.817606	1.932725e-26	1.339533e-21	5.824056e-23
24	7911559	8139706	NM_014302	SEC61G	0.817606	1.932725e-26	1.339533e-21	5.581387e-23
25	8039939	7949075	NM_016404	TRMT112	0.812547	6.892997e-26	4.777398e-21	1.910959e-22
26	7911559	7949075	NM_016404	TRMT112	0.812547	6.892997e-26	4.777398e-21	1.837461e-22
27	7911559	8009227	NM_002805	PSMC5	0.812155	7.594270e-26	5.263436e-21	1.949421e-22
28	8039939	8009227	NM_002805	PSMC5	0.812155	7.594270e-26	5.263436e-21	1.879799e-22
29	7911559	8148270	NM_005005	NDUFB9	0.810772	1.066971e-25	7.394966e-21	2.549988e-22
30	8039939	8148270	NM_005005	NDUFB9	0.810772	1.066971e-25	7.394966e-21	2.464989e-22
31	7911559	7950644	NM_004549	NDUFC2	0.810575	1.119729e-25	7.760617e-21	2.503425e-22
32	8039939	7950644	NM_004549	NDUFC2	0.810575	1.119729e-25	7.760617e-21	2.425193e-22
33	8039939	7918050	NM_002295	RPSA	0.808186	2.000450e-25	1.386472e-20	4.201431e-22
34	7911559	7918050	NM_002295	RPSA	0.808186	2.000450e-25	1.386472e-20	4.077859e-22
35	8039939	8089249	NM_000986	RPL24	0.808027	2.078656e-25	1.440675e-20	4.116213e-22
36	7911559	8089249	NM_000986	RPL24	0.808027	2.078656e-25	1.440675e-20	4.001874e-22
37	7911559	7950444	ENST00000428553		0.805981	3.393341e-25	2.351857e-20	6.356370e-22
38	8039939	7950444	ENST00000428553		0.805981	3.393341e-25	2.351857e-20	6.189097e-22
39	7911559	8165309	NM_003792	EDF1	0.804063	5.344482e-25	3.704154e-20	9.497830e-22
40	8039939	8165309	NM_003792	EDF1	0.804063	5.344482e-25	3.704154e-20	9.260384e-22
41	8039939	8078905	NM_002295	RPSA	0.800724	1.164440e-24	8.070497e-20	1.968414e-21
42	7911559	8078905	NM_002295	RPSA	0.800724	1.164440e-24	8.070497e-20	1.921547e-21
43	8039939	8000323	NM_005003	NDUFAB1	0.800059	1.357568e-24	9.409033e-20	2.188147e-21
44	7911559	8000323	NM_005003	NDUFAB1	0.800059	1.357568e-24	9.409033e-20	2.138417e-21
45	7911559	8073645	NM_015380	SAMM50	0.799196	1.655159e-24	1.147158e-19	2.549240e-21
46	8039939	8073645	NM_015380	SAMM50	0.799196	1.655159e-24	1.147158e-19	2.493821e-21
47	8039939	7920984	NM_005998	CCT3	0.798453	1.961551e-24	1.359512e-19	2.892578e-21
48	7911559	7920984	NM_005998	CCT3	0.798453	1.961551e-24	1.359512e-19	2.832316e-21
49	7911559	8122136	NM_001016	RPS12	0.798103	2.124322e-24	1.472325e-19	3.004745e-21
50	8039939	8122136	NM_001016	RPS12	0.798103	2.124322e-24	1.472325e-19	2.944650e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation