[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
8059	8073645	NM_015380	SAMM50		sorting and assembly machinery component 50 homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 8059.
Getting list of p-values for id 8059.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.149 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8073645	8042720	NM_006429	CCT7	0.856698	2.225070e-31	3.855378e-27	3.855378e-27
2	8073645	8028514	NM_013234	EIF3K	0.834037	2.331518e-28	4.039821e-24	2.019911e-24
3	8073645	8015712	NM_001040431	CCDC56	0.829034	9.403495e-28	1.629344e-23	5.431145e-24
4	8073645	8023063	NM_001001937	ATP5A1	0.819905	1.070364e-26	1.854620e-22	4.636550e-23
5	8073645	8018600	NM_014230	SRP68	0.817950	1.770061e-26	3.066984e-22	6.133969e-23
6	8073645	7918345	NM_002790	PSMA5	0.812495	6.981026e-26	1.209602e-21	2.016004e-22
7	8073645	8004497	NM_001416	EIF4A1	0.810634	1.103737e-25	1.912445e-21	2.732064e-22
8	8073645	8137252	NM_130759	GIMAP1	0.809227	1.555051e-25	2.694436e-21	3.368045e-22
9	8073645	8119648	NM_057161	KLHDC3	0.808958	1.659958e-25	2.876210e-21	3.195789e-22
10	8073645	8075798	NM_003753	EIF3D	0.807400	2.417182e-25	4.188252e-21	4.188252e-22
11	8073645	7903619	NM_006513	SARS	0.807204	2.533456e-25	4.389719e-21	3.990654e-22
12	8073645	7914563	NM_003680	YARS	0.805596	3.718888e-25	6.443717e-21	5.369764e-22
13	8073645	7950644	NM_004549	NDUFC2	0.805163	4.121557e-25	7.141422e-21	5.493402e-22
14	8073645	8048120	NM_004044	ATIC	0.801733	9.216840e-25	1.597002e-20	1.140716e-21
15	8073645	8043100	NM_021103	TMSB10	0.801346	1.008512e-24	1.747448e-20	1.164966e-21
16	8073645	7911559	NM_017971	MRPL20	0.799196	1.655159e-24	2.867894e-20	1.792434e-21
17	8073645	8039939	NM_017971	MRPL20	0.799196	1.655159e-24	2.867894e-20	1.686997e-21
18	8073645	7899737	NM_003757	EIF3I	0.798003	2.173282e-24	3.765645e-20	2.092025e-21
19	8073645	7912670	NM_006004	UQCRH	0.797525	2.422347e-24	4.197201e-20	2.209053e-21
20	8073645	8007715	NM_021079	NMT1	0.796835	2.832442e-24	4.907773e-20	2.453887e-21
21	8073645	8009227	NM_002805	PSMC5	0.794958	4.320096e-24	7.485431e-20	3.564491e-21
22	8073645	8148270	NM_005005	NDUFB9	0.793828	5.557093e-24	9.628775e-20	4.376716e-21
23	8073645	8062349	NM_002951	RPN2	0.793590	5.859058e-24	1.015199e-19	4.413909e-21
24	8073645	8109368	NM_005754	G3BP1	0.792138	8.078059e-24	1.399685e-19	5.832022e-21
25	8073645	7940688	NM_002696	POLR2G	0.791672	8.950233e-24	1.550807e-19	6.203228e-21
26	8073645	8093156	NM_007362	NCBP2	0.791660	8.974109e-24	1.554944e-19	5.980554e-21
27	8073645	8172358	NM_153477	UXT	0.791074	1.020336e-23	1.767936e-19	6.547911e-21
28	8073645	8064218	NM_012469	PRPF6	0.788473	1.796441e-23	3.112694e-19	1.111676e-20
29	8073645	7916590	NM_001625	AK2	0.787809	2.072880e-23	3.591679e-19	1.238510e-20
30	8073645	7920317	NM_004515	ILF2	0.787693	2.125233e-23	3.682391e-19	1.227464e-20
31	8073645	8104166	NM_004168	SDHA	0.787664	2.138219e-23	3.704891e-19	1.195126e-20
32	8073645	7913256	NM_005216	DDOST	0.787298	2.312974e-23	4.007691e-19	1.252403e-20
33	8073645	7906662	NM_016406	UFC1	0.787087	2.419963e-23	4.193071e-19	1.270627e-20
34	8073645	8136631	NM_003143	SSBP1	0.785904	3.116135e-23	5.399328e-19	1.588038e-20
35	8073645	8073192	NM_006003	UQCRFS1	0.785732	3.232060e-23	5.600190e-19	1.600054e-20
36	8073645	7949075	NM_016404	TRMT112	0.785609	3.318031e-23	5.749152e-19	1.596987e-20
37	8073645	8030007	NM_001425	EMP3	0.783996	4.668127e-23	8.088464e-19	2.186071e-20
38	8073645	7957746	NM_213611	SLC25A3	0.783358	5.339362e-23	9.251512e-19	2.434608e-20
39	8073645	8133434	NM_022170	EIF4H	0.782355	6.588396e-23	1.141571e-18	2.927106e-20
40	8073645	7975976	NM_012111	AHSA1	0.781256	8.283895e-23	1.435350e-18	3.588376e-20
41	8073645	7900576	NM_006347	PPIH	0.780269	1.016215e-22	1.760796e-18	4.294625e-20
42	8073645	8073457	NM_001469	XRCC6	0.779679	1.147908e-22	1.988980e-18	4.735666e-20
43	8073645	8170971	NM_001363	DKC1	0.779605	1.165402e-22	2.019292e-18	4.696028e-20
44	8073645	8064502	NM_003091	SNRPB	0.777533	1.781885e-22	3.087473e-18	7.016984e-20
45	8073645	8006392	NM_002815	PSMD11	0.777303	1.867237e-22	3.235362e-18	7.189693e-20
46	8073645	8052562	NM_006430	CCT4	0.776042	2.411747e-22	4.178833e-18	9.084420e-20
47	8073645	8093314	NM_004547	NDUFB4	0.775644	2.613672e-22	4.528710e-18	9.635552e-20
48	8073645	8081945	NM_004547	NDUFB4	0.775644	2.613672e-22	4.528710e-18	9.434812e-20
49	8073645	8002919	NM_001130089	KARS	0.774952	3.004637e-22	5.206135e-18	1.062476e-19
50	8073645	8165309	NM_003792	EDF1	0.774025	3.618683e-22	6.270092e-18	1.254018e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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