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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
8832 7914617 NM_013411 AK2 link to infopage adenylate kinase 2
14443 7916590 NM_001625 AK2 link to infopage adenylate kinase 2

Fetching correlation data, please wait...
Getting list of correlations for id 8832.
Getting list of p-values for id 8832.
1 of 2 done.
Getting list of correlations for id 14443.
Getting list of p-values for id 14443.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.236 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7916590 8073192 NM_006003 UQCRFS1 link to infopage 0.855674 3.124041e-31 1.082605e-26 1.082605e-26
2 7916590 8064522 NM_174856 IDH3B link to infopage 0.853790 5.793912e-31 2.007822e-26 1.003911e-26
3 7916590 8136849 NM_001143679 GSTK1 link to infopage 0.844092 1.221520e-29 4.233055e-25 1.411018e-25
4 7916590 8133434 NM_022170 EIF4H link to infopage 0.836108 1.290978e-28 4.473754e-24 1.118439e-24
5 7916590 8117888 NM_006325 RAN link to infopage 0.829607 8.033741e-28 2.784013e-23 5.568025e-24
6 7916590 8138773 NM_022170 EIF4H link to infopage 0.826326 1.963517e-27 6.804373e-23 1.134062e-23
7 7916590 7947934 NM_014342 MTCH2 link to infopage 0.814493 4.246276e-26 1.471504e-21 2.102149e-22
8 7916590 7920317 NM_004515 ILF2 link to infopage 0.813546 5.379093e-26 1.864071e-21 2.330088e-22
9 7916590 8040908 NM_014748 SNX17 link to infopage 0.812056 7.782541e-26 2.696962e-21 2.996624e-22
10 7916590 7949075 NM_016404 TRMT112 link to infopage 0.807262 2.498544e-25 8.658453e-21 8.658453e-22
11 7916590 7913256 NM_005216 DDOST link to infopage 0.807177 2.550037e-25 8.836900e-21 8.033545e-22
12 7916590 8119648 NM_057161 KLHDC3 link to infopage 0.797661 2.348647e-24 8.139002e-20 6.782502e-21
13 7916590 8004247 NM_001142798 C17orf49 link to infopage 0.796648 2.954559e-24 1.023873e-19 7.875945e-21
14 7916590 8077550 NM_001077525 MTMR14 link to infopage 0.795200 4.091585e-24 1.417898e-19 1.012784e-20
15 7916590 7914563 NM_003680 YARS link to infopage 0.793804 5.587743e-24 1.936377e-19 1.290918e-20
16 7916590 8116020 NM_006816 LMAN2 link to infopage 0.790763 1.092128e-23 3.784662e-19 2.365413e-20
17 7916590 7918345 NM_002790 PSMA5 link to infopage 0.790351 1.195177e-23 4.141766e-19 2.436333e-20
18 7916590 8134699 NM_006833 COPS6 link to infopage 0.789709 1.374270e-23 4.762394e-19 2.645775e-20
19 7916590 7929831 NM_017902 HIF1AN link to infopage 0.788965 1.615176e-23 5.597232e-19 2.945912e-20
20 7916590 8073645 NM_015380 SAMM50 link to infopage 0.787809 2.072880e-23 7.183358e-19 3.591679e-20
21 7916590 8013696 NM_014680 KIAA0100 link to infopage 0.785288 3.551967e-23 1.230899e-18 5.861422e-20
22 7916590 7905395 NM_002796 PSMB4 link to infopage 0.784253 4.421990e-23 1.532396e-18 6.965438e-20
23 7916590 7990211 NM_000520 HEXA link to infopage 0.780026 1.068624e-22 3.703208e-18 1.610090e-19
24 7916590 8004497 NM_001416 EIF4A1 link to infopage 0.779969 1.081270e-22 3.747035e-18 1.561264e-19
25 7916590 7997230 NM_002811 PSMD7 link to infopage 0.777139 1.930751e-22 6.690826e-18 2.676330e-19
26 7916590 8027621 NM_000175 GPI link to infopage 0.776992 1.989131e-22 6.893136e-18 2.651206e-19
27 7916590 7941382 NM_182710 KAT5 link to infopage 0.774510 3.283197e-22 1.137759e-17 4.213923e-19
28 7916590 7919971 NM_000449 RFX5 link to infopage 0.774362 3.382379e-22 1.172130e-17 4.186177e-19
29 7916590 8146142 NM_178819 AGPAT6 link to infopage 0.773970 3.658301e-22 1.267748e-17 4.371544e-19
30 7916590 7915504 NM_022821 ELOVL1 link to infopage 0.770930 6.689837e-22 2.318296e-17 7.727653e-19
31 7916590 8030007 NM_001425 EMP3 link to infopage 0.770615 7.117326e-22 2.466438e-17 7.956252e-19
32 7916590 7920492 NM_001098616 C1orf43 link to infopage 0.769861 8.253135e-22 2.860041e-17 8.937629e-19
33 7916590 8052925 NM_144582 TEX261 link to infopage 0.769735 8.459234e-22 2.931463e-17 8.883221e-19
34 7916590 7900576 NM_006347 PPIH link to infopage 0.768938 9.885734e-22 3.425802e-17 1.007589e-18
35 7916590 7940051 NM_015457 ZDHHC5 link to infopage 0.768723 1.030854e-21 3.572321e-17 1.020663e-18
36 7916590 8006392 NM_002815 PSMD11 link to infopage 0.767897 1.210469e-21 4.194761e-17 1.165211e-18
37 7916590 7978208 NM_012461 TINF2 link to infopage 0.766576 1.562552e-21 5.414869e-17 1.463478e-18
38 7916590 7967149 NM_016237 ANAPC5 link to infopage 0.766315 1.643378e-21 5.694963e-17 1.498674e-18
39 7916590 8060758 NM_000311 PRNP link to infopage 0.766127 1.703906e-21 5.904716e-17 1.514030e-18
40 7916590 8016099 NM_004247 EFTUD2 link to infopage 0.766048 1.729904e-21 5.994808e-17 1.498702e-18
41 7916590 7956166 NM_015292 ESYT1 link to infopage 0.765724 1.841042e-21 6.379946e-17 1.556084e-18
42 7916590 8042720 NM_006429 CCT7 link to infopage 0.764149 2.487652e-21 8.620711e-17 2.052550e-18
43 7916590 8132580 NM_006555 YKT6 link to infopage 0.762609 3.332117e-21 1.154712e-16 2.685376e-18
44 7916590 8110803 NM_030782 CLPTM1L link to infopage 0.762349 3.499240e-21 1.212627e-16 2.755970e-18
45 7916590 8107470 NM_002823 PTMA link to infopage 0.761733 3.930373e-21 1.362031e-16 3.026737e-18
46 7916590 7963935 NM_032364 DNAJC14 link to infopage 0.761555 4.063982e-21 1.408332e-16 3.061592e-18
47 7916590 7920903 NM_003145 SSR2 link to infopage 0.761476 4.124972e-21 1.429468e-16 3.041421e-18
48 7916590 8104166 NM_004168 SDHA link to infopage 0.761396 4.187638e-21 1.451184e-16 3.023300e-18
49 7916590 7925996 NM_032807 FBXO18 link to infopage 0.760061 5.376525e-21 1.863181e-16 3.802410e-18
50 7916590 8157283 NM_004697 PRPF4 link to infopage 0.759667 5.786596e-21 2.005287e-16 4.010574e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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