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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 4 variables:
id Label1 AccNum GeneSym Info Gene Name
3932 7976239 AF170294 PTMA link to infopage prothymosin, alpha
16306 7961022 BC051265 PTMA link to infopage prothymosin, alpha
17099 8107470 NM_002823 PTMA link to infopage prothymosin, alpha
17139 8061136 NM_002823 PTMA link to infopage prothymosin, alpha

Fetching correlation data, please wait...
Getting list of correlations for id 3932.
Getting list of p-values for id 3932.
1 of 4 done.
Getting list of correlations for id 16306.
Getting list of p-values for id 16306.
2 of 4 done.
Getting list of correlations for id 17099.
Getting list of p-values for id 17099.
3 of 4 done.
Getting list of correlations for id 17139.
Getting list of p-values for id 17139.
4 of 4 done.
Calculating corrections for multiple testing (n=69308), please wait...
Done; whole program took 0.386 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7961022 7954006 ENST00000397627 link to infopage 0.982781 2.318921e-77 1.607198e-72 1.607198e-72
2 7961022 8107470 NM_002823 PTMA link to infopage 0.918369 2.899495e-43 2.009582e-38 1.004791e-38
3 8107470 7961022 BC051265 PTMA link to infopage 0.918369 2.899495e-43 2.009582e-38 6.698607e-39
4 8107470 7954006 ENST00000397627 link to infopage 0.907627 1.278147e-40 8.858581e-36 2.214645e-36
5 7961022 7969559 ENST00000393073 link to infopage 0.843390 1.511078e-29 1.047298e-24 2.094596e-25
6 8107470 7920317 NM_004515 ILF2 link to infopage 0.823075 4.673280e-27 3.238957e-22 5.398262e-23
7 8061136 8107470 NM_002823 PTMA link to infopage 0.817218 2.133624e-26 1.478772e-21 2.112532e-22
8 8107470 8061136 NM_002823 PTMA link to infopage 0.817218 2.133624e-26 1.478772e-21 1.848465e-22
9 8107470 7969559 ENST00000393073 link to infopage 0.812683 6.664145e-26 4.618786e-21 5.131984e-22
10 8107470 8075798 NM_003753 EIF3D link to infopage 0.796071 3.365285e-24 2.332411e-19 2.332411e-20
11 8107470 7905395 NM_002796 PSMB4 link to infopage 0.792438 7.561415e-24 5.240666e-19 4.764242e-20
12 7961022 8061136 NM_002823 PTMA link to infopage 0.788819 1.667040e-23 1.155392e-18 9.628269e-20
13 8061136 7961022 BC051265 PTMA link to infopage 0.788819 1.667040e-23 1.155392e-18 8.887633e-20
14 8107470 7948908 NR_002564 SNORD26 link to infopage 0.787689 2.126854e-23 1.474080e-18 1.052914e-19
15 8107470 8109368 NM_005754 G3BP1 link to infopage 0.786361 2.827053e-23 1.959374e-18 1.306249e-19
16 8107470 8073457 NM_001469 XRCC6 link to infopage 0.786016 3.042579e-23 2.108751e-18 1.317969e-19
17 8107470 7949075 NM_016404 TRMT112 link to infopage 0.783389 5.304091e-23 3.676160e-18 2.162447e-19
18 8107470 7955646 NM_001417 EIF4B link to infopage 0.777783 1.693353e-22 1.173629e-17 6.520160e-19
19 8107470 7903619 NM_006513 SARS link to infopage 0.770591 7.151750e-22 4.956735e-17 2.608808e-18
20 8107470 7947934 NM_014342 MTCH2 link to infopage 0.762500 3.400948e-21 2.357129e-16 1.178564e-17
21 8107470 8024238 NM_001280 CIRBP link to infopage 0.762288 3.540112e-21 2.453581e-16 1.168372e-17
22 8107470 7916590 NM_001625 AK2 link to infopage 0.761733 3.930373e-21 2.724063e-16 1.238210e-17
23 8107470 7956743 NM_001034996 RPL14 link to infopage 0.761148 4.387064e-21 3.040586e-16 1.321994e-17
24 8107470 8042720 NM_006429 CCT7 link to infopage 0.758338 7.406979e-21 5.133629e-16 2.139012e-17
25 8107470 8064351 NM_177559 CSNK2A1 link to infopage 0.757873 8.070655e-21 5.593610e-16 2.237444e-17
26 8061136 7969559 ENST00000393073 link to infopage 0.757763 8.237319e-21 5.709121e-16 2.195816e-17
27 8107470 8080991 NM_194247 HNRNPA3 link to infopage 0.756302 1.077639e-20 7.468900e-16 2.766259e-17
28 8107470 7912198 NM_001428 ENO1 link to infopage 0.756089 1.120476e-20 7.765792e-16 2.773497e-17
29 8107470 8072946 NM_016091 EIF3L link to infopage 0.755998 1.139414e-20 7.897051e-16 2.723121e-17
30 8107470 8018600 NM_014230 SRP68 link to infopage 0.754101 1.609651e-20 1.115617e-15 3.718722e-17
31 8061136 7954006 ENST00000397627 link to infopage 0.753806 1.698118e-20 1.176932e-15 3.796554e-17
32 8107470 7918345 NM_002790 PSMA5 link to infopage 0.753723 1.723837e-20 1.194757e-15 3.733615e-17
33 8107470 8022170 NM_001024662 RPL6 link to infopage 0.753388 1.831491e-20 1.269370e-15 3.846576e-17
34 8107470 7967149 NM_016237 ANAPC5 link to infopage 0.752988 1.968518e-20 1.364341e-15 4.012767e-17
35 8107470 7966534 NM_001024662 RPL6 link to infopage 0.752560 2.126647e-20 1.473937e-15 4.211248e-17
36 8107470 8038086 NM_000979 RPL18 link to infopage 0.752550 2.130504e-20 1.476610e-15 4.101693e-17
37 8107470 7982204 NM_005517 HMGN2 link to infopage 0.751620 2.517842e-20 1.745066e-15 4.716395e-17
38 8107470 7957746 NM_213611 SLC25A3 link to infopage 0.750705 2.965551e-20 2.055364e-15 5.408853e-17
39 8107470 7963244 NM_005653 TFCP2 link to infopage 0.749904 3.420151e-20 2.370438e-15 6.078046e-17
40 8107470 8010949 NM_016080 GLOD4 link to infopage 0.749435 3.716871e-20 2.576089e-15 6.440222e-17
41 8107470 8133434 NM_022170 EIF4H link to infopage 0.748964 4.040421e-20 2.800335e-15 6.830085e-17
42 8107470 8084092 NM_002492 NDUFB5 link to infopage 0.748955 4.046982e-20 2.804882e-15 6.678291e-17
43 8107470 8117888 NM_006325 RAN link to infopage 0.748378 4.481304e-20 3.105902e-15 7.223028e-17
44 8107470 8116520 NM_006098 GNB2L1 link to infopage 0.747924 4.855345e-20 3.365143e-15 7.648052e-17
45 8107470 7899774 NM_004964 HDAC1 link to infopage 0.747800 4.962614e-20 3.439489e-15 7.643309e-17
46 8107470 8152465 NM_003756 EIF3H link to infopage 0.745901 6.921470e-20 4.797132e-15 1.042855e-16
47 8107470 8000409 NM_005517 HMGN2 link to infopage 0.743911 9.780047e-20 6.778355e-15 1.442203e-16
48 8107470 8174636 NM_006937 SUMO2 link to infopage 0.743910 9.780174e-20 6.778443e-15 1.412176e-16
49 8107470 8062349 NM_002951 RPN2 link to infopage 0.743291 1.088374e-19 7.543302e-15 1.539449e-16
50 8107470 8138773 NM_022170 EIF4H link to infopage 0.740273 1.824562e-19 1.264567e-14 2.529134e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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