Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16263	8080991	NM_194247	HNRNPA3		heterogeneous nuclear ribonucleoprotein A3

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8080991	8046590	NM_194247	HNRNPA3		0.989649	1.143281e-88	1.980963e-84	1.980963e-84
2	8080991	7971920	NM_194247	HNRNPA3		0.983081	9.471391e-78	1.641108e-73	8.205540e-74
3	8080991	8016898	NM_001078166	SRSF1		0.928339	4.573600e-46	7.924678e-42	2.641559e-42
4	8080991	8006573	NM_139215	TAF15		0.920837	6.358030e-44	1.101656e-39	2.754140e-40
5	8080991	8025429	NM_005968	HNRNPM		0.916038	1.164018e-42	2.016893e-38	4.033787e-39
6	8080991	8101340	NR_003249	HNRPDL		0.906512	2.303845e-40	3.991872e-36	6.653119e-37
7	8080991	8116664	NM_003913	PRPF4B		0.905451	4.008038e-40	6.944727e-36	9.921039e-37
8	8080991	8099649	NM_001358	DHX15		0.904806	5.593867e-40	9.692494e-36	1.211562e-36
9	8080991	7912852	NM_001412	EIF1AX		0.898699	1.173454e-38	2.033244e-34	2.259160e-35
10	8080991	7924351	NM_004446	EPRS		0.898267	1.444852e-38	2.503496e-34	2.503496e-35
11	8080991	7974066	NM_002687	PNN		0.897652	1.939313e-38	3.360247e-34	3.054770e-35
12	8080991	8059689	NM_005381	NCL		0.897064	2.565225e-38	4.444766e-34	3.703972e-35
13	8080991	7931187	NM_004725	BUB3		0.896650	3.120605e-38	5.407072e-34	4.159286e-35
14	8080991	8083183	NM_001080415	SR140		0.892422	2.203466e-37	3.817945e-33	2.727103e-34
15	8080991	8116297	NM_005520	HNRNPH1		0.891599	3.192097e-37	5.530947e-33	3.687298e-34
16	8080991	7942553	NM_014752	SPCS2		0.891378	3.525727e-37	6.109027e-33	3.818142e-34
17	8080991	8101324	NM_031370	HNRNPD		0.891333	3.597446e-37	6.233294e-33	3.666644e-34
18	8080991	8138670	NM_031243	HNRNPA2B1		0.891052	4.078788e-37	7.067316e-33	3.926286e-34
19	8080991	7969935	NM_000123	ERCC5		0.890206	5.942028e-37	1.029575e-32	5.418816e-34
20	8080991	7972069	NM_015057	MYCBP2		0.889574	7.854966e-37	1.361030e-32	6.805150e-34
21	8080991	7903519	NM_018061	PRPF38B		0.889240	9.097898e-37	1.576393e-32	7.506632e-34
22	8080991	7930956	NM_007190	SEC23IP		0.888451	1.284271e-36	2.225256e-32	1.011480e-33
23	8080991	8160622	NM_018225	SMU1		0.888338	1.349140e-36	2.337655e-32	1.016372e-33
24	8080991	8044745	NM_006773	DDX18		0.887231	2.177794e-36	3.773464e-32	1.572277e-33
25	8080991	7987325	NM_014691	AQR		0.886230	3.345280e-36	5.796367e-32	2.318547e-33
26	8080991	7927854	NM_012207	HNRNPH3		0.884882	5.920703e-36	1.025880e-31	3.945693e-33
27	8080991	8022814	NM_002136	HNRNPA1		0.884626	6.595471e-36	1.142797e-31	4.232582e-33
28	8080991	8034313	NR_002944	HNRPA1L-2		0.883648	9.926753e-36	1.720008e-31	6.142887e-33
29	8080991	8043861	NM_015904	EIF5B		0.883457	1.074970e-35	1.862600e-31	6.422758e-33
30	8080991	8084694	NM_001967	EIF4A2		0.883083	1.255352e-35	2.175148e-31	7.250492e-33
31	8080991	7935320	NM_020123	TM9SF3		0.882820	1.399940e-35	2.425675e-31	7.824759e-33
32	8080991	7995552	NM_015247	CYLD		0.881997	1.964613e-35	3.404085e-31	1.063777e-32
33	8080991	8052443	NM_014709	USP34		0.881933	2.016799e-35	3.494508e-31	1.058942e-32
34	8080991	7995574	NM_002136	HNRNPA1		0.881913	2.033462e-35	3.523380e-31	1.036288e-32
35	8080991	8108134	NM_014829	DDX46		0.881512	2.395563e-35	4.150792e-31	1.185941e-32
36	8080991	7973902	NM_003136	SRP54		0.879224	6.040565e-35	1.046649e-30	2.907357e-32
37	8080991	8045455	NM_014607	UBXN4		0.878892	6.897334e-35	1.195101e-30	3.230003e-32
38	8080991	7989253	NM_024755	SLTM		0.878876	6.941017e-35	1.202670e-30	3.164921e-32
39	8080991	8052526	NM_003400	XPO1		0.878859	6.987224e-35	1.210676e-30	3.104298e-32
40	8080991	8003758	NM_000430	PAFAH1B1		0.878483	8.117725e-35	1.406558e-30	3.516396e-32
41	8080991	7975521	NM_021239	RBM25		0.878466	8.171029e-35	1.415794e-30	3.453157e-32
42	8080991	8107375	NM_022828	YTHDC2		0.878452	8.218611e-35	1.424039e-30	3.390568e-32
43	8080991	8086077	NM_015097	CLASP2		0.878193	9.107991e-35	1.578142e-30	3.670097e-32
44	8080991	8078834	NM_020839	WDR48		0.877628	1.138586e-34	1.972827e-30	4.483698e-32
45	8080991	8163275	NM_001080398	KIAA0368		0.877317	1.287306e-34	2.230515e-30	4.956700e-32
46	8080991	8039947	NM_006625	SRSF10		0.877244	1.324746e-34	2.295388e-30	4.989974e-32
47	8080991	8175393	NM_004840	ARHGEF6		0.876851	1.545452e-34	2.677804e-30	5.697455e-32
48	8080991	7939137	NM_006360	EIF3M		0.876703	1.637716e-34	2.837671e-30	5.911815e-32
49	8080991	8006638	NM_024835	GGNBP2		0.875730	2.393657e-34	4.147489e-30	8.464263e-32
50	8080991	7917156	NM_003902	FUBP1		0.875675	2.444611e-34	4.235778e-30	8.471556e-32

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.