Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16324	7971920	NM_194247	HNRNPA3		heterogeneous nuclear ribonucleoprotein A3

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7971920	8080991	NM_194247	HNRNPA3		0.983081	9.471391e-78	1.641108e-73	1.641108e-73
2	7971920	8046590	NM_194247	HNRNPA3		0.978049	5.555815e-72	9.626560e-68	4.813280e-68
3	7971920	8016898	NM_001078166	SRSF1		0.937037	7.290540e-49	1.263232e-44	4.210773e-45
4	7971920	8006573	NM_139215	TAF15		0.915577	1.524114e-42	2.640832e-38	6.602081e-39
5	7971920	8116664	NM_003913	PRPF4B		0.910301	3.018345e-41	5.229886e-37	1.045977e-37
6	7971920	8099649	NM_001358	DHX15		0.898104	1.562093e-38	2.706638e-34	4.511064e-35
7	7971920	7974066	NM_002687	PNN		0.897010	2.631420e-38	4.559462e-34	6.513517e-35
8	7971920	8101340	NR_003249	HNRPDL		0.895095	6.465291e-38	1.120241e-33	1.400301e-34
9	7971920	8025429	NM_005968	HNRNPM		0.894825	7.328639e-38	1.269833e-33	1.410926e-34
10	7971920	7912852	NM_001412	EIF1AX		0.894624	8.041695e-38	1.393385e-33	1.393385e-34
11	7971920	8138670	NM_031243	HNRNPA2B1		0.893561	1.311731e-37	2.272837e-33	2.066215e-34
12	7971920	8083183	NM_001080415	SR140		0.893377	1.426882e-37	2.472358e-33	2.060299e-34
13	7971920	7935320	NM_020123	TM9SF3		0.891178	3.856056e-37	6.681389e-33	5.139530e-34
14	7971920	8052443	NM_014709	USP34		0.889811	7.073985e-37	1.225709e-32	8.755067e-34
15	7971920	8108134	NM_014829	DDX46		0.885504	4.553064e-36	7.889094e-32	5.259396e-33
16	7971920	7903519	NM_018061	PRPF38B		0.884293	7.584605e-36	1.314185e-31	8.213654e-33
17	7971920	7927854	NM_012207	HNRNPH3		0.884153	8.043110e-36	1.393630e-31	8.197822e-33
18	7971920	7987325	NM_014691	AQR		0.883859	9.093506e-36	1.575632e-31	8.753510e-33
19	7971920	7975521	NM_021239	RBM25		0.882953	1.324821e-35	2.295518e-31	1.208167e-32
20	7971920	7933947	NM_022079	HERC4		0.882503	1.595240e-35	2.764073e-31	1.382036e-32
21	7971920	7925565	NM_031844	HNRNPU		0.880571	3.512505e-35	6.086118e-31	2.898151e-32
22	7971920	8045455	NM_014607	UBXN4		0.880522	3.582618e-35	6.207603e-31	2.821638e-32
23	7971920	7903032	NM_007358	MTF2		0.880412	3.745367e-35	6.489598e-31	2.821564e-32
24	7971920	7924351	NM_004446	EPRS		0.879282	5.902494e-35	1.022725e-30	4.261355e-32
25	7971920	8160622	NM_018225	SMU1		0.879225	6.037704e-35	1.046153e-30	4.184612e-32
26	7971920	7995552	NM_015247	CYLD		0.879185	6.134422e-35	1.062911e-30	4.088120e-32
27	7971920	7967420	NM_018183	SBNO1		0.878132	9.331452e-35	1.616861e-30	5.988373e-32
28	7971920	7972069	NM_015057	MYCBP2		0.877863	1.037955e-34	1.798464e-30	6.423086e-32
29	7971920	8070341	NM_033656	BRWD1		0.877389	1.251267e-34	2.168070e-30	7.476105e-32
30	7971920	8052526	NM_003400	XPO1		0.876509	1.767195e-34	3.062019e-30	1.020673e-31
31	7971920	8044745	NM_006773	DDX18		0.876358	1.874354e-34	3.247693e-30	1.047643e-31
32	7971920	8116297	NM_005520	HNRNPH1		0.876164	2.021276e-34	3.502265e-30	1.094458e-31
33	7971920	8057719	NM_014362	HIBCH		0.875645	2.473147e-34	4.285222e-30	1.298552e-31
34	7971920	8084694	NM_001967	EIF4A2		0.874649	3.633919e-34	6.296491e-30	1.851909e-31
35	7971920	7953878	NM_001004419	CLEC2D		0.874305	4.147306e-34	7.186036e-30	2.053153e-31
36	7971920	8022814	NM_002136	HNRNPA1		0.874172	4.363725e-34	7.561027e-30	2.100285e-31
37	7971920	8017634	NM_004396	DDX5		0.873955	4.741496e-34	8.215590e-30	2.220430e-31
38	7971920	8039947	NM_006625	SRSF10		0.873799	5.032174e-34	8.719247e-30	2.294539e-31
39	7971920	7942553	NM_014752	SPCS2		0.873688	5.250296e-34	9.097189e-30	2.332612e-31
40	7971920	8034313	NR_002944	HNRPA1L-2		0.873539	5.556851e-34	9.628355e-30	2.407089e-31
41	7971920	8086077	NM_015097	CLASP2		0.873160	6.418128e-34	1.112069e-29	2.712363e-31
42	7971920	7956697	NM_015026	MON2		0.873142	6.461826e-34	1.119641e-29	2.665811e-31
43	7971920	7902382	NM_004582	RABGGTB		0.873043	6.710376e-34	1.162707e-29	2.703970e-31
44	7971920	7969935	NM_000123	ERCC5		0.872523	8.166948e-34	1.415087e-29	3.216107e-31
45	7971920	8055060	NM_018383	WDR33		0.872517	8.185818e-34	1.418357e-29	3.151904e-31
46	7971920	7975368	NM_001039465	SRSF5		0.871819	1.064647e-33	1.844714e-29	4.010248e-31
47	7971920	8078834	NM_020839	WDR48		0.871802	1.071655e-33	1.856856e-29	3.950758e-31
48	7971920	8128013	NM_020320	RARS2		0.871785	1.078567e-33	1.868832e-29	3.893401e-31
49	7971920	7960221	NM_005056	KDM5A		0.871638	1.139478e-33	1.974374e-29	4.029334e-31
50	7971920	8092849	NM_024524	ATP13A3		0.871572	1.168095e-33	2.023959e-29	4.047917e-31

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.