Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5842	8128013	NM_020320	RARS2		arginyl-tRNA synthetase 2, mitochondrial

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8128013	7903321	NM_001130841	RTCD1		0.920363	8.536796e-44	1.479171e-39	1.479171e-39
2	8128013	7995552	NM_015247	CYLD		0.919677	1.305314e-43	2.261717e-39	1.130859e-39
3	8128013	7956697	NM_015026	MON2		0.917576	4.673586e-43	8.097922e-39	2.699307e-39
4	8128013	7903519	NM_018061	PRPF38B		0.917484	4.937683e-43	8.555523e-39	2.138881e-39
5	8128013	8070341	NM_033656	BRWD1		0.916914	6.936039e-43	1.201808e-38	2.403615e-39
6	8128013	7929168	NM_025235	TNKS2		0.915607	1.497776e-42	2.595196e-38	4.325327e-39
7	8128013	8052443	NM_014709	USP34		0.914935	2.215340e-42	3.838520e-38	5.483601e-39
8	8128013	8085852	NM_018297	NGLY1		0.914013	3.769243e-42	6.530968e-38	8.163709e-39
9	8128013	7934812	NM_015045	WAPAL		0.913013	6.662093e-42	1.154341e-37	1.282601e-38
10	8128013	8054771	NM_025181	SLC35F5		0.912468	9.058278e-42	1.569528e-37	1.569528e-38
11	8128013	7984641	NM_005744	ARIH1		0.912392	9.456754e-42	1.638572e-37	1.489611e-38
12	8128013	7942839	NM_015885	PCF11		0.911304	1.735741e-41	3.007519e-37	2.506266e-38
13	8128013	7933947	NM_022079	HERC4		0.909403	4.925212e-41	8.533914e-37	6.564549e-38
14	8128013	8146243	NM_032410	HOOK3		0.909327	5.131262e-41	8.890938e-37	6.350670e-38
15	8128013	7913415	NM_032236	USP48		0.908702	7.195149e-41	1.246703e-36	8.311356e-38
16	8128013	8023195	NM_005901	SMAD2		0.908228	9.276118e-41	1.607273e-36	1.004546e-37
17	8128013	8045455	NM_014607	UBXN4		0.908014	1.040257e-40	1.802453e-36	1.060267e-37
18	8128013	8116664	NM_003913	PRPF4B		0.907607	1.292227e-40	2.239041e-36	1.243912e-37
19	8128013	8095163	NM_001024924	EXOC1		0.907256	1.556827e-40	2.697514e-36	1.419744e-37
20	8128013	7989735	NM_006660	CLPX		0.906785	1.995932e-40	3.458351e-36	1.729176e-37
21	8128013	8152148	NM_015902	UBR5		0.906275	2.609054e-40	4.520707e-36	2.152718e-37
22	8128013	8078834	NM_020839	WDR48		0.905127	4.740287e-40	8.213495e-36	3.733407e-37
23	8128013	7975521	NM_021239	RBM25		0.905124	4.746963e-40	8.225063e-36	3.576114e-37
24	8128013	7970413	NR_003272	PSPC1		0.904523	6.468917e-40	1.120869e-35	4.670289e-37
25	8128013	8100292	NM_015030	FRYL		0.904284	7.313572e-40	1.267223e-35	5.068891e-37
26	8128013	8079346	NM_014016	SACM1L		0.904271	7.361442e-40	1.275517e-35	4.905835e-37
27	8128013	7967420	NM_018183	SBNO1		0.904086	8.091998e-40	1.402100e-35	5.192965e-37
28	8128013	7967900	NM_003453	ZMYM2		0.903088	1.344171e-39	2.329044e-35	8.318015e-37
29	8128013	8124273	NM_030939	C6orf62		0.903003	1.402773e-39	2.430586e-35	8.381330e-37
30	8128013	8083183	NM_001080415	SR140		0.902838	1.524957e-39	2.642293e-35	8.807643e-37
31	8128013	8047339	NR_026584	BZW1L1		0.901388	3.148306e-39	5.455070e-35	1.759700e-36
32	8128013	8058127	NR_027856	CLK1		0.900899	4.011596e-39	6.950893e-35	2.172154e-36
33	8128013	7908421	NM_004600	TROVE2		0.900628	4.584137e-39	7.942933e-35	2.406949e-36
34	8128013	7951008	NM_024116	TAF1D		0.899589	7.623507e-39	1.320925e-34	3.885074e-36
35	8128013	8086077	NM_015097	CLASP2		0.898074	1.584762e-38	2.745917e-34	7.845478e-36
36	8128013	8021015	NM_002647	PIK3C3		0.897788	1.817241e-38	3.148734e-34	8.746484e-36
37	8128013	8127698	NM_017934	PHIP		0.897577	2.009676e-38	3.482166e-34	9.411258e-36
38	8128013	7989253	NM_024755	SLTM		0.897487	2.097870e-38	3.634980e-34	9.565737e-36
39	8128013	8092849	NM_024524	ATP13A3		0.897085	2.539504e-38	4.400198e-34	1.128256e-35
40	8128013	8082607	NM_014382	ATP2C1		0.897026	2.611640e-38	4.525188e-34	1.131297e-35
41	8128013	8052845	NM_022173	TIA1		0.896837	2.856610e-38	4.949648e-34	1.207231e-35
42	8128013	8084146	NM_001013439	FXR1		0.896670	3.090452e-38	5.354826e-34	1.274959e-35
43	8128013	7972062	NM_012158	FBXL3		0.895826	4.595997e-38	7.963484e-34	1.851973e-35
44	8128013	7922250	NM_181093	SCYL3		0.895638	5.019001e-38	8.696423e-34	1.976460e-35
45	8128013	7907790	NM_014810	CEP350		0.894927	6.990165e-38	1.211186e-33	2.691524e-35
46	8128013	8016898	NM_001078166	SRSF1		0.894482	8.589448e-38	1.488294e-33	3.235421e-35
47	8128013	8090898	NM_005862	STAG1		0.894387	8.975171e-38	1.555128e-33	3.308783e-35
48	8128013	7973902	NM_003136	SRP54		0.894139	1.005936e-37	1.742985e-33	3.631219e-35
49	8128013	8087951	NM_018165	PBRM1		0.894101	1.023651e-37	1.773681e-33	3.619757e-35
50	8128013	8084016	NM_006218	PIK3CA		0.893957	1.093841e-37	1.895298e-33	3.790596e-35

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.