Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16505	8101324	NM_031370	HNRNPD		heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8101324	8006573	NM_139215	TAF15		0.915600	1.504586e-42	2.606996e-38	2.606996e-38
2	8101324	7944285	NM_001655	ARCN1		0.907435	1.415416e-40	2.452491e-36	1.226246e-36
3	8101324	7980463	NM_012245	SNW1		0.903659	1.006243e-39	1.743518e-35	5.811727e-36
4	8101324	7930956	NM_007190	SEC23IP		0.897429	2.156109e-38	3.735891e-34	9.339727e-35
5	8101324	7995421	NM_031490	LONP2		0.894637	7.993601e-38	1.385051e-33	2.770102e-34
6	8101324	8025429	NM_005968	HNRNPM		0.892291	2.337591e-37	4.050343e-33	6.750572e-34
7	8101324	8080991	NM_194247	HNRNPA3		0.891333	3.597446e-37	6.233294e-33	8.904706e-34
8	8101324	8006392	NM_002815	PSMD11		0.889303	8.846425e-37	1.532820e-32	1.916025e-33
9	8101324	7978718	NM_006364	SEC23A		0.887321	2.094937e-36	3.629898e-32	4.033220e-33
10	8101324	8049199	NM_001103147	GIGYF2		0.886128	3.493571e-36	6.053310e-32	6.053310e-33
11	8101324	8163275	NM_001080398	KIAA0368		0.882897	1.356078e-35	2.349676e-31	2.136069e-32
12	8101324	7984641	NM_005744	ARIH1		0.882726	1.455098e-35	2.521248e-31	2.101040e-32
13	8101324	8046590	NM_194247	HNRNPA3		0.881022	2.924350e-35	5.067021e-31	3.897708e-32
14	8101324	8150797	NM_015941	ATP6V1H		0.880011	4.403356e-35	7.629695e-31	5.449782e-32
15	8101324	7970413	NR_003272	PSPC1		0.879775	4.843452e-35	8.392249e-31	5.594833e-32
16	8101324	8136539	NM_016019	LUC7L2		0.878995	6.619819e-35	1.147016e-30	7.168850e-32
17	8101324	8171516	NM_002893	RBBP7		0.877077	1.414698e-34	2.451247e-30	1.441910e-31
18	8101324	7903519	NM_018061	PRPF38B		0.875786	2.342140e-34	4.058226e-30	2.254570e-31
19	8101324	8002729	NR_027264	GLG1		0.875686	2.434633e-34	4.218489e-30	2.220258e-31
20	8101324	8027592	NM_001114093	LSM14A		0.874438	3.939933e-34	6.826722e-30	3.413361e-31
21	8101324	7947894	NM_198700	CELF1		0.874177	4.354852e-34	7.545653e-30	3.593168e-31
22	8101324	7936614	NM_003750	EIF3A		0.873514	5.609146e-34	9.718967e-30	4.417712e-31
23	8101324	8094704	NM_005339	UBE2K		0.872420	8.490924e-34	1.471222e-29	6.396619e-31
24	8101324	7929168	NM_025235	TNKS2		0.871423	1.235182e-33	2.140201e-29	8.917503e-31
25	8101324	8132070	NM_002047	GARS		0.870729	1.599898e-33	2.772144e-29	1.108857e-30
26	8101324	8091048	NR_023350	COPB2		0.870514	1.733458e-33	3.003563e-29	1.155217e-30
27	8101324	8160914	NM_007126	VCP		0.870195	1.951054e-33	3.380592e-29	1.252071e-30
28	8101324	8045090	NM_020120	UGGT1		0.869974	2.117351e-33	3.668734e-29	1.310262e-30
29	8101324	7972069	NM_015057	MYCBP2		0.869972	2.118569e-33	3.670845e-29	1.265809e-30
30	8101324	7948814	NM_001079559	HNRNPUL2		0.869776	2.277331e-33	3.945932e-29	1.315311e-30
31	8101324	8154316	NM_152896	UHRF2		0.868785	3.278698e-33	5.681000e-29	1.832581e-30
32	8101324	8003758	NM_000430	PAFAH1B1		0.867902	4.524150e-33	7.838994e-29	2.449686e-30
33	8101324	8018600	NM_014230	SRP68		0.867085	6.083051e-33	1.054010e-28	3.193971e-30
34	8101324	7989253	NM_024755	SLTM		0.866540	7.400576e-33	1.282298e-28	3.771464e-30
35	8101324	8132943	NM_001762	CCT6A		0.866496	7.519398e-33	1.302886e-28	3.722532e-30
36	8101324	7955890	NM_031157	HNRNPA1		0.865729	9.898330e-33	1.715084e-28	4.764121e-30
37	8101324	8068289	NM_138927	SON		0.864715	1.419399e-32	2.459393e-28	6.647009e-30
38	8101324	8006638	NM_024835	GGNBP2		0.864412	1.580189e-32	2.737993e-28	7.205246e-30
39	8101324	8058428	NM_005006	NDUFS1		0.864073	1.781061e-32	3.086044e-28	7.912934e-30
40	8101324	8157700	NM_012197	RABGAP1		0.863778	1.975739e-32	3.423363e-28	8.558407e-30
41	8101324	8152148	NM_015902	UBR5		0.863386	2.266676e-32	3.927469e-28	9.579194e-30
42	8101324	8164177	NM_001006617	MAPKAP1		0.863358	2.289560e-32	3.967120e-28	9.445525e-30
43	8101324	8023195	NM_005901	SMAD2		0.862780	2.801962e-32	4.854959e-28	1.129060e-29
44	8101324	7900119	NM_005119	THRAP3		0.862768	2.813881e-32	4.875612e-28	1.108094e-29
45	8101324	7971920	NM_194247	HNRNPA3		0.862380	3.220487e-32	5.580139e-28	1.240031e-29
46	8101324	8059689	NM_005381	NCL		0.861269	4.731639e-32	8.198511e-28	1.782285e-29
47	8101324	7969935	NM_000123	ERCC5		0.861028	5.141064e-32	8.907921e-28	1.895302e-29
48	8101324	7975521	NM_021239	RBM25		0.860820	5.521456e-32	9.567026e-28	1.993130e-29
49	8101324	8095163	NM_001024924	EXOC1		0.860477	6.212599e-32	1.076457e-27	2.196851e-29
50	8101324	7985166	NM_004136	IREB2		0.860473	6.219544e-32	1.077660e-27	2.155321e-29

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.