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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
13948 8171516 NM_002893 RBBP7 link to infopage retinoblastoma binding protein 7

Fetching correlation data, please wait...
Getting list of correlations for id 13948.
Getting list of p-values for id 13948.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.215 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8171516 8114455 NM_004134 HSPA9 link to infopage 0.894947 6.925098e-38 1.199912e-33 1.199912e-33
2 8171516 8109368 NM_005754 G3BP1 link to infopage 0.889003 1.009329e-36 1.748864e-32 8.744320e-33
3 8171516 8135576 NM_015641 TES link to infopage 0.885073 5.462765e-36 9.465332e-32 3.155111e-32
4 8171516 7995421 NM_031490 LONP2 link to infopage 0.878326 8.639582e-35 1.496980e-30 3.742451e-31
5 8171516 8025429 NM_005968 HNRNPM link to infopage 0.877725 1.096068e-34 1.899156e-30 3.798313e-31
6 8171516 8101324 NM_031370 HNRNPD link to infopage 0.877077 1.414698e-34 2.451247e-30 4.085412e-31
7 8171516 8101376 NM_014933 SEC31A link to infopage 0.874251 4.233946e-34 7.336159e-30 1.048023e-30
8 8171516 7944285 NM_001655 ARCN1 link to infopage 0.873976 4.702448e-34 8.147931e-30 1.018491e-30
9 8171516 8087951 NM_018165 PBRM1 link to infopage 0.873390 5.880261e-34 1.018873e-29 1.132081e-30
10 8171516 7924351 NM_004446 EPRS link to infopage 0.868504 3.632648e-33 6.294289e-29 6.294289e-30
11 8171516 7934852 NM_005271 GLUD1 link to infopage 0.867284 5.660678e-33 9.808257e-29 8.916598e-30
12 8171516 8092564 NM_004593 TRA2B link to infopage 0.865604 1.034889e-32 1.793153e-28 1.494294e-29
13 8171516 8123524 NM_018303 EXOC2 link to infopage 0.865018 1.275008e-32 2.209206e-28 1.699389e-29
14 8171516 7976200 NM_006888 CALM1 link to infopage 0.864834 1.360769e-32 2.357804e-28 1.684146e-29
15 8171516 8164177 NM_001006617 MAPKAP1 link to infopage 0.864383 1.596094e-32 2.765552e-28 1.843701e-29
16 8171516 8145586 NM_018091 ELP3 link to infopage 0.864300 1.643998e-32 2.848556e-28 1.780348e-29
17 8171516 8006392 NM_002815 PSMD11 link to infopage 0.863173 2.442741e-32 4.232536e-28 2.489727e-29
18 8171516 8163023 NM_003640 IKBKAP link to infopage 0.862849 2.735542e-32 4.739874e-28 2.633264e-29
19 8171516 7981032 NM_020414 DDX24 link to infopage 0.862551 3.035147e-32 5.258999e-28 2.767894e-29
20 8171516 8006573 NM_139215 TAF15 link to infopage 0.862160 3.476745e-32 6.024156e-28 3.012078e-29
21 8171516 7944991 NM_152713 STT3A link to infopage 0.860226 6.767984e-32 1.172689e-27 5.584231e-29
22 8171516 8132070 NM_002047 GARS link to infopage 0.859195 9.614976e-32 1.665987e-27 7.572668e-29
23 8171516 8059689 NM_005381 NCL link to infopage 0.858664 1.150904e-31 1.994172e-27 8.670311e-29
24 8171516 8103106 NM_006726 LRBA link to infopage 0.858538 1.201144e-31 2.081223e-27 8.671762e-29
25 8171516 8168280 NM_001145408 NONO link to infopage 0.857493 1.706562e-31 2.956961e-27 1.182784e-28
26 8171516 8018600 NM_014230 SRP68 link to infopage 0.856180 2.642894e-31 4.579343e-27 1.761286e-28
27 8171516 7969935 NM_000123 ERCC5 link to infopage 0.855996 2.808488e-31 4.866267e-27 1.802321e-28
28 8171516 7899774 NM_004964 HDAC1 link to infopage 0.855854 2.943543e-31 5.100278e-27 1.821528e-28
29 8171516 8080991 NM_194247 HNRNPA3 link to infopage 0.855437 3.377753e-31 5.852633e-27 2.018149e-28
30 8171516 7931187 NM_004725 BUB3 link to infopage 0.855252 3.590027e-31 6.220440e-27 2.073480e-28
31 8171516 8105153 NM_012343 NNT link to infopage 0.854547 4.526336e-31 7.842782e-27 2.529930e-28
32 8171516 8111629 NM_153485 NUP155 link to infopage 0.854460 4.655665e-31 8.066870e-27 2.520897e-28
33 8171516 8132943 NM_001762 CCT6A link to infopage 0.853405 6.567333e-31 1.137922e-26 3.448248e-28
34 8171516 8101043 NM_203505 G3BP2 link to infopage 0.851989 1.037640e-30 1.797919e-26 5.287998e-28
35 8171516 7939242 NM_005898 CAPRIN1 link to infopage 0.851505 1.211815e-30 2.099712e-26 5.999176e-28
36 8171516 8101340 NR_003249 HNRPDL link to infopage 0.851441 1.236811e-30 2.143022e-26 5.952839e-28
37 8171516 7930956 NM_007190 SEC23IP link to infopage 0.851285 1.300147e-30 2.252765e-26 6.088554e-28
38 8171516 7916443 NM_015306 USP24 link to infopage 0.850050 1.925967e-30 3.337123e-26 8.781902e-28
39 8171516 8147483 NM_178812 MTDH link to infopage 0.849692 2.156768e-30 3.737032e-26 9.582134e-28
40 8171516 8128956 NM_002037 FYN link to infopage 0.849587 2.229852e-30 3.863664e-26 9.659160e-28
41 8171516 8086077 NM_015097 CLASP2 link to infopage 0.849374 2.384887e-30 4.132295e-26 1.007877e-27
42 8171516 8100251 NM_015030 FRYL link to infopage 0.849163 2.548504e-30 4.415792e-26 1.051379e-27
43 8171516 7924923 NM_018230 NUP133 link to infopage 0.848551 3.088560e-30 5.351547e-26 1.244546e-27
44 8171516 8150797 NM_015941 ATP6V1H link to infopage 0.848450 3.187965e-30 5.523786e-26 1.255406e-27
45 8171516 8152782 NM_014846 KIAA0196 link to infopage 0.846962 5.066903e-30 8.779424e-26 1.950983e-27
46 8171516 8053890 NM_020151 STARD7 link to infopage 0.846780 5.361206e-30 9.289362e-26 2.019427e-27
47 8171516 8099649 NM_001358 DHX15 link to infopage 0.846650 5.579669e-30 9.667893e-26 2.056999e-27
48 8171516 7925364 NM_018072 HEATR1 link to infopage 0.845389 8.225605e-30 1.425251e-25 2.969272e-27
49 8171516 8107750 NM_130809 PRRC1 link to infopage 0.844838 9.733808e-30 1.686577e-25 3.441994e-27
50 8171516 8160622 NM_018225 SMU1 link to infopage 0.844718 1.009816e-29 1.749709e-25 3.499418e-27

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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