Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15702	8053890	NM_020151	STARD7		StAR-related lipid transfer (START) domain containing 7

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8053890	8114455	NM_004134	HSPA9		0.857183	1.892938e-31	3.279893e-27	3.279893e-27
2	8053890	8171516	NM_002893	RBBP7		0.846780	5.361206e-30	9.289362e-26	4.644681e-26
3	8053890	7958644	NM_170665	ATP2A2		0.842692	1.864438e-29	3.230511e-25	1.076837e-25
4	8053890	8006392	NM_002815	PSMD11		0.841331	2.801960e-29	4.854957e-25	1.213739e-25
5	8053890	7934852	NM_005271	GLUD1		0.840385	3.710219e-29	6.428697e-25	1.285739e-25
6	8053890	8101324	NM_031370	HNRNPD		0.837180	9.476894e-29	1.642061e-24	2.736769e-25
7	8053890	8160914	NM_007126	VCP		0.830007	7.195569e-28	1.246776e-23	1.781109e-24
8	8053890	7971134	NM_025138	C13orf23		0.826995	1.639066e-27	2.840010e-23	3.550012e-24
9	8053890	7944991	NM_152713	STT3A		0.825599	2.387436e-27	4.136711e-23	4.596345e-24
10	8053890	8135576	NM_015641	TES		0.825335	2.562317e-27	4.439727e-23	4.439727e-24
11	8053890	7930956	NM_007190	SEC23IP		0.824865	2.905751e-27	5.034794e-23	4.577086e-24
12	8053890	8168280	NM_001145408	NONO		0.824220	3.450349e-27	5.978420e-23	4.982017e-24
13	8053890	8073799	NM_013236	ATXN10		0.823495	4.182216e-27	7.246526e-23	5.574251e-24
14	8053890	8163784	NM_012164	FBXW2		0.822293	5.742130e-27	9.949389e-23	7.106707e-24
15	8053890	7944285	NM_001655	ARCN1		0.821838	6.471368e-27	1.121294e-22	7.475293e-24
16	8053890	8164177	NM_001006617	MAPKAP1		0.821042	7.967300e-27	1.380494e-22	8.628088e-24
17	8053890	8019250	NM_000918	P4HB		0.818422	1.568661e-26	2.718019e-22	1.598835e-23
18	8053890	8128956	NM_002037	FYN		0.816278	2.708973e-26	4.693837e-22	2.607687e-23
19	8053890	8066668	NM_020967	NCOA5		0.814367	4.381881e-26	7.592484e-22	3.996044e-23
20	8053890	7990211	NM_000520	HEXA		0.812604	6.795570e-26	1.177468e-21	5.887342e-23
21	8053890	7936614	NM_003750	EIF3A		0.812587	6.825084e-26	1.182582e-21	5.631344e-23
22	8053890	8164607	NM_015033	FNBP1		0.812348	7.240270e-26	1.254522e-21	5.702371e-23
23	8053890	8109368	NM_005754	G3BP1		0.808284	1.953560e-25	3.384934e-21	1.471710e-22
24	8053890	8164155	NM_001123355	PPP6C		0.808231	1.978710e-25	3.428510e-21	1.428546e-22
25	8053890	8170097	NM_001042537	SLC9A6		0.807947	2.119277e-25	3.672071e-21	1.468828e-22
26	8053890	8056545	NM_013233	STK39		0.807300	2.475706e-25	4.289656e-21	1.649868e-22
27	8053890	8132070	NM_002047	GARS		0.805338	3.953453e-25	6.850149e-21	2.537092e-22
28	8053890	8148333	NM_015137	EFR3A		0.804503	4.817257e-25	8.346861e-21	2.981022e-22
29	8053890	8094704	NM_005339	UBE2K		0.803821	5.657346e-25	9.802483e-21	3.380167e-22
30	8053890	7995421	NM_031490	LONP2		0.799328	1.605942e-24	2.782616e-20	9.275387e-22
31	8053890	7952557	NM_003139	SRPR		0.798231	2.063076e-24	3.574691e-20	1.153126e-21
32	8053890	8050908	NM_000182	HADHA		0.797537	2.416188e-24	4.186530e-20	1.308291e-21
33	8053890	8068974	NM_003274	TRAPPC10		0.796713	2.911657e-24	5.045027e-20	1.528796e-21
34	8053890	7955908	NM_005337	NCKAP1L		0.795863	3.525984e-24	6.109473e-20	1.796904e-21
35	8053890	8099340	NM_017491	WDR1		0.795842	3.543155e-24	6.139225e-20	1.754064e-21
36	8053890	7907024	NM_017542	POGK		0.794496	4.788960e-24	8.297832e-20	2.304953e-21
37	8053890	8025429	NM_005968	HNRNPM		0.793043	6.614583e-24	1.146109e-19	3.097591e-21
38	8053890	8090091	NM_198402	PTPLB		0.791264	9.788986e-24	1.696138e-19	4.463520e-21
39	8053890	8050215	NM_006826	YWHAQ		0.789845	1.334235e-23	2.311829e-19	5.927767e-21
40	8053890	8164883	NM_033161	SURF4		0.789395	1.471384e-23	2.549467e-19	6.373668e-21
41	8053890	8147483	NM_178812	MTDH		0.789392	1.472234e-23	2.550941e-19	6.221807e-21
42	8053890	7975747	NM_001933	DLST		0.788903	1.636812e-23	2.836103e-19	6.752627e-21
43	8053890	7959282	NM_194271	RNF34		0.788627	1.737447e-23	3.010474e-19	7.001103e-21
44	8053890	7914791	NM_005066	SFPQ		0.788293	1.867354e-23	3.235564e-19	7.353556e-21
45	8053890	8009164	NM_005828	DCAF7		0.788150	1.925859e-23	3.336935e-19	7.415412e-21
46	8053890	8027592	NM_001114093	LSM14A		0.788047	1.968984e-23	3.411659e-19	7.416650e-21
47	8053890	7933164	NM_004966	HNRNPF		0.787344	2.290378e-23	3.968539e-19	8.443699e-21
48	8053890	8043937	NM_017546	C2orf29		0.786628	2.669989e-23	4.626290e-19	9.638104e-21
49	8053890	8172876	NM_006306	SMC1A		0.786510	2.738130e-23	4.744358e-19	9.682362e-21
50	8053890	8163023	NM_003640	IKBKAP		0.786401	2.802510e-23	4.855909e-19	9.711818e-21

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.