[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 12048.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12048	7975747	NM_001933	DLST		dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)

Fetching correlation data, please wait...
Getting list of correlations for id 12048.
Getting list of p-values for id 12048.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.108 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7975747	8069910	NM_020706	SFRS15	0.838011	7.445357e-29	1.290057e-24	1.290057e-24
2	7975747	7981249	NM_032233	SETD3	0.835036	1.754682e-28	3.040337e-24	1.520168e-24
3	7975747	7936762	NM_001001976	ATE1	0.813772	5.084244e-26	8.809469e-22	2.936490e-22
4	7975747	7913450	NM_005529	HSPG2	-0.809908	1.317700e-25	2.283179e-21	5.707949e-22
5	7975747	7995332			-0.807983	2.100932e-25	3.640285e-21	7.280569e-22
6	7975747	8110894	NM_017755	NSUN2	0.806372	3.091652e-25	5.356906e-21	8.928176e-22
7	7975747	8049509	NM_015893	PRLH	-0.803764	5.734505e-25	9.936177e-21	1.419454e-21
8	7975747	8001496	NM_007006	NUDT21	0.801513	9.701450e-25	1.680970e-20	2.101213e-21
9	7975747	8073799	NM_013236	ATXN10	0.799174	1.663350e-24	2.882087e-20	3.202319e-21
10	7975747	8096556	NM_015143	METAP1	0.799165	1.666867e-24	2.888180e-20	2.888180e-21
11	7975747	8090091	NM_198402	PTPLB	0.798416	1.978121e-24	3.427491e-20	3.115901e-21
12	7975747	8132580	NM_006555	YKT6	0.797283	2.559141e-24	4.434223e-20	3.695186e-21
13	7975747	8095048	NM_030917	FIP1L1	0.796459	3.083189e-24	5.342242e-20	4.109417e-21
14	7975747	7958644	NM_170665	ATP2A2	0.795531	3.798924e-24	6.582396e-20	4.701711e-21
15	7975747	8008213	NM_007067	MYST2	0.794813	4.462194e-24	7.731644e-20	5.154429e-21
16	7975747	8038292	NM_033043	CGB5	-0.789838	1.336286e-23	2.315382e-19	1.447114e-20
17	7975747	8066668	NM_020967	NCOA5	0.788972	1.612512e-23	2.793999e-19	1.643529e-20
18	7975747	8053890	NM_020151	STARD7	0.788903	1.636812e-23	2.836103e-19	1.575613e-20
19	7975747	7913300	NM_016287	HP1BP3	0.787156	2.384581e-23	4.131763e-19	2.174612e-20
20	7975747	8110821	NM_001044	SLC6A3	-0.785803	3.183908e-23	5.516757e-19	2.758379e-20
21	7975747	8172876	NM_006306	SMC1A	0.783274	5.434275e-23	9.415969e-19	4.483795e-20
22	7975747	8160914	NM_007126	VCP	0.782759	6.054172e-23	1.049006e-18	4.768211e-20
23	7975747	7936614	NM_003750	EIF3A	0.781586	7.733908e-23	1.340054e-18	5.826322e-20
24	7975747	8019250	NM_000918	P4HB	0.781227	8.333350e-23	1.443920e-18	6.016331e-20
25	7975747	8042335	NM_003375	VDAC2	0.778624	1.425871e-22	2.470606e-18	9.882424e-20
26	7975747	8025697	NM_012218	ILF3	0.778509	1.459681e-22	2.529189e-18	9.727650e-20
27	7975747	8164155	NM_001123355	PPP6C	0.778454	1.476276e-22	2.557944e-18	9.473866e-20
28	7975747	7990511	NM_002833	PTPN9	0.777512	1.789323e-22	3.100360e-18	1.107271e-19
29	7975747	8030187	NM_033043	CGB5	-0.777193	1.909612e-22	3.308785e-18	1.140960e-19
30	7975747	7990683	NM_015162	ACSBG1	-0.777175	1.916717e-22	3.321096e-18	1.107032e-19
31	7975747	8038280	NM_000737	CGB	-0.775807	2.529113e-22	4.382194e-18	1.413611e-19
32	7975747	8054614	NM_022662	ANAPC1	0.775803	2.531016e-22	4.385491e-18	1.370466e-19
33	7975747	8132070	NM_002047	GARS	0.775483	2.699884e-22	4.678088e-18	1.417602e-19
34	7975747	7999634	NM_006985	NPIP	0.774964	2.997168e-22	5.193193e-18	1.527410e-19
35	7975747	8094271	NM_025205	MED28	0.773135	4.322192e-22	7.489062e-18	2.139732e-19
36	7975747	8074647	NM_058004	PI4KA	0.772862	4.563300e-22	7.906831e-18	2.196342e-19
37	7975747	7902269	NM_004768	SRSF11	0.772310	5.092537e-22	8.823838e-18	2.384821e-19
38	7975747	7930956	NM_007190	SEC23IP	0.771569	5.896904e-22	1.021757e-17	2.688833e-19
39	7975747	8100902	NM_032217	ANKRD17	0.771240	6.293180e-22	1.090419e-17	2.795947e-19
40	7975747	8136401	NM_015135	NUP205	0.770214	7.700831e-22	1.334323e-17	3.335807e-19
41	7975747	7914791	NM_005066	SFPQ	0.769129	9.523145e-22	1.650075e-17	4.024574e-19
42	7975747	8071489	NM_005446	P2RX6	-0.768838	1.007959e-21	1.746490e-17	4.158309e-19
43	7975747	8008201	NM_002507	NGFR	-0.768064	1.171871e-21	2.030502e-17	4.722097e-19
44	7975747	8129675			-0.767599	1.282493e-21	2.222176e-17	5.050400e-19
45	7975747	8135576	NM_015641	TES	0.767474	1.313905e-21	2.276603e-17	5.059117e-19
46	7975747	7995344			-0.766975	1.446925e-21	2.507087e-17	5.450189e-19
47	7975747	7923659	NM_032833	PPP1R15B	0.766553	1.569699e-21	2.719818e-17	5.786846e-19
48	7975747	8072436	NM_001002837	INPP5J	-0.766163	1.692042e-21	2.931801e-17	6.107920e-19
49	7975747	8138007	ENST00000410965		-0.765990	1.749077e-21	3.030626e-17	6.184951e-19
50	7975747	8088602	NM_015520	MAGI1	-0.765889	1.783542e-21	3.090343e-17	6.180686e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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