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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
13123 7958644 NM_170665 ATP2A2 link to infopage ATPase, Ca++ transporting, cardiac muscle, slow twitch 2

Fetching correlation data, please wait...
Getting list of correlations for id 13123.
Getting list of p-values for id 13123.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.152 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7958644 8053890 NM_020151 STARD7 link to infopage 0.842692 1.864438e-29 3.230511e-25 3.230511e-25
2 7958644 7936614 NM_003750 EIF3A link to infopage 0.841304 2.824457e-29 4.893936e-25 2.446968e-25
3 7958644 7930956 NM_007190 SEC23IP link to infopage 0.838895 5.751561e-29 9.965731e-25 3.321910e-25
4 7958644 8172876 NM_006306 SMC1A link to infopage 0.832023 4.109264e-28 7.120122e-24 1.780030e-24
5 7958644 7955908 NM_005337 NCKAP1L link to infopage 0.830974 5.504931e-28 9.538393e-24 1.907679e-24
6 7958644 8001693 NM_016284 CNOT1 link to infopage 0.828366 1.128955e-27 1.956141e-23 3.260235e-24
7 7958644 7914791 NM_005066 SFPQ link to infopage 0.828134 1.202794e-27 2.084082e-23 2.977260e-24
8 7958644 7952557 NM_003139 SRPR link to infopage 0.825575 2.402924e-27 4.163546e-23 5.204433e-24
9 7958644 8017776 NM_014877 HELZ link to infopage 0.823134 4.601596e-27 7.973185e-23 8.859095e-24
10 7958644 8132070 NM_002047 GARS link to infopage 0.821079 7.889895e-27 1.367082e-22 1.367082e-23
11 7958644 7981249 NM_032233 SETD3 link to infopage 0.820161 1.001827e-26 1.735865e-22 1.578059e-23
12 7958644 8163275 NM_001080398 KIAA0368 link to infopage 0.820033 1.035519e-26 1.794244e-22 1.495204e-23
13 7958644 8096556 NM_015143 METAP1 link to infopage 0.816654 2.462344e-26 4.266504e-22 3.281926e-23
14 7958644 8083282 NM_032383 HPS3 link to infopage 0.816550 2.528471e-26 4.381082e-22 3.129344e-23
15 7958644 8008201 NM_002507 NGFR link to infopage -0.811057 9.950569e-26 1.724135e-21 1.149423e-22
16 7958644 8100902 NM_032217 ANKRD17 link to infopage 0.807088 2.605077e-25 4.513817e-21 2.821136e-22
17 7958644 8087951 NM_018165 PBRM1 link to infopage 0.806907 2.720507e-25 4.713822e-21 2.772836e-22
18 7958644 8062492 NM_020336 RALGAPB link to infopage 0.805542 3.766815e-25 6.526761e-21 3.625978e-22
19 7958644 7999841 NM_015092 SMG1 link to infopage 0.804642 4.661718e-25 8.077359e-21 4.251242e-22
20 7958644 8066668 NM_020967 NCOA5 link to infopage 0.804558 4.755303e-25 8.239514e-21 4.119757e-22
21 7958644 7976876 NM_001376 DYNC1H1 link to infopage 0.804438 4.892810e-25 8.477771e-21 4.037034e-22
22 7958644 7907024 NM_017542 POGK link to infopage 0.802683 7.387342e-25 1.280005e-20 5.818204e-22
23 7958644 8069910 NM_020706 SFRS15 link to infopage 0.800374 1.262401e-24 2.187362e-20 9.510270e-22
24 7958644 7944285 NM_001655 ARCN1 link to infopage 0.799435 1.566834e-24 2.714853e-20 1.131189e-21
25 7958644 7902269 NM_004768 SRSF11 link to infopage 0.797805 2.273541e-24 3.939364e-20 1.575745e-21
26 7958644 8019250 NM_000918 P4HB link to infopage 0.797559 2.404180e-24 4.165722e-20 1.602201e-21
27 7958644 7914296 NM_001020658 PUM1 link to infopage 0.797482 2.446143e-24 4.238433e-20 1.569790e-21
28 7958644 8160914 NM_007126 VCP link to infopage 0.796674 2.937384e-24 5.089605e-20 1.817716e-21
29 7958644 7916443 NM_015306 USP24 link to infopage 0.796554 3.017770e-24 5.228890e-20 1.803065e-21
30 7958644 7944850 NM_032811 TBRG1 link to infopage 0.795793 3.581887e-24 6.206336e-20 2.068779e-21
31 7958644 7975747 NM_001933 DLST link to infopage 0.795531 3.798924e-24 6.582396e-20 2.123353e-21
32 7958644 8107005 NM_001750 CAST link to infopage 0.795064 4.218003e-24 7.308533e-20 2.283917e-21
33 7958644 8154333 NM_015061 KDM4C link to infopage 0.794545 4.736884e-24 8.207599e-20 2.487151e-21
34 7958644 8009164 NM_005828 DCAF7 link to infopage 0.794419 4.872302e-24 8.442238e-20 2.483011e-21
35 7958644 8051464 NM_019024 HEATR5B link to infopage 0.794402 4.890292e-24 8.473410e-20 2.420974e-21
36 7958644 8110522 NM_001746 CANX link to infopage 0.793840 5.542583e-24 9.603634e-20 2.667676e-21
37 7958644 8008213 NM_007067 MYST2 link to infopage 0.792312 7.774460e-24 1.347081e-19 3.640758e-21
38 7958644 7993371 NM_001004067 NOMO3 link to infopage 0.791781 8.737800e-24 1.513999e-19 3.984207e-21
39 7958644 7999791 NM_001004067 NOMO3 link to infopage 0.791781 8.737800e-24 1.513999e-19 3.882048e-21
40 7958644 7993511 NM_001004067 NOMO3 link to infopage 0.791781 8.737800e-24 1.513999e-19 3.784997e-21
41 7958644 7913571 NM_001102398 HNRNPR link to infopage 0.791622 9.047692e-24 1.567694e-19 3.823643e-21
42 7958644 8002729 NR_027264 GLG1 link to infopage 0.790623 1.126191e-23 1.951352e-19 4.646075e-21
43 7958644 7925978 NM_017782 C10orf18 link to infopage 0.789267 1.512886e-23 2.621378e-19 6.096228e-21
44 7958644 7997099 NM_012426 SF3B3 link to infopage 0.788723 1.701851e-23 2.948797e-19 6.701811e-21
45 7958644 8128956 NM_002037 FYN link to infopage 0.788546 1.768120e-23 3.063621e-19 6.808048e-21
46 7958644 7972069 NM_015057 MYCBP2 link to infopage 0.788396 1.826309e-23 3.164445e-19 6.879229e-21
47 7958644 8145636 NM_024567 HMBOX1 link to infopage 0.786830 2.557311e-23 4.431053e-19 9.427773e-21
48 7958644 8101324 NM_031370 HNRNPD link to infopage 0.786458 2.769035e-23 4.797908e-19 9.995641e-21
49 7958644 8147483 NM_178812 MTDH link to infopage 0.786122 2.974768e-23 5.154380e-19 1.051914e-20
50 7958644 7944991 NM_152713 STT3A link to infopage 0.786112 2.981081e-23 5.165320e-19 1.033064e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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